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CCDC83 coiled-coil domain containing 83 [ Homo sapiens (human) ]

Gene ID: 220047, updated on 18-Aug-2020

Summary

Official Symbol
CCDC83provided by HGNC
Official Full Name
coiled-coil domain containing 83provided by HGNC
Primary source
HGNC:HGNC:28535
See related
Ensembl:ENSG00000150676
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSD9; CT148; KP-CoT-23
Expression
Restricted expression toward testis (RPKM 12.4) See more
Orthologs

Genomic context

See CCDC83 in Genome Data Viewer
Location:
11q14.1-q14.2
Exon count:
15
Annotation release Status Assembly Chr Location
109.20200815 current GRCh38.p13 (GCF_000001405.39) 11 NC_000011.10 (85855066..85920017)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 11 NC_000011.9 (85566144..85631064)

Chromosome 11 - NC_000011.10Genomic Context describing neighboring genes Neighboring gene coiled-coil domain containing 89 Neighboring gene synaptotagmin like 2 Neighboring gene adenosylhomocysteinase pseudogene 6 Neighboring gene solute carrier family 25 member 1 pseudogene 1 Neighboring gene phosphatidylinositol binding clathrin assembly protein

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ42119, MGC34732

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
coiled-coil domain-containing protein 83

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001286159.2NP_001273088.1  coiled-coil domain-containing protein 83 isoform 2

    See identical proteins and their annotated locations for NP_001273088.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. The encoded isoform (2) is shorter than isoform 1.
    Source sequence(s)
    AP000974, AP003128
    Consensus CDS
    CCDS66196.1
    UniProtKB/Swiss-Prot
    Q8IWF9
    Related
    ENSP00000344512.3, ENST00000342404.7
    Conserved Domains (1) summary
    cl21456
    Location:80140
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
  2. NM_173556.5NP_775827.2  coiled-coil domain-containing protein 83 isoform 1

    See identical proteins and their annotated locations for NP_775827.2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AP000974, AP003128
    Consensus CDS
    CCDS8271.1
    UniProtKB/Swiss-Prot
    Q8IWF9
    Related
    ENSP00000280245.4, ENST00000280245.8
    Conserved Domains (1) summary
    cl21456
    Location:80140
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20200815

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000011.10 Reference GRCh38.p13 Primary Assembly

    Range
    85855066..85920017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011544839.2XP_011543141.1  coiled-coil domain-containing protein 83 isoform X1

    See identical proteins and their annotated locations for XP_011543141.1

    UniProtKB/Swiss-Prot
    Q8IWF9
    Conserved Domains (1) summary
    cl21456
    Location:80140
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
  2. XM_011544842.1XP_011543144.1  coiled-coil domain-containing protein 83 isoform X2

    Conserved Domains (1) summary
    cl21456
    Location:80140
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
  3. XM_017017354.1XP_016872843.1  coiled-coil domain-containing protein 83 isoform X3

  4. XM_011544843.1XP_011543145.1  coiled-coil domain-containing protein 83 isoform X4

  5. XM_017017355.1XP_016872844.1  coiled-coil domain-containing protein 83 isoform X5

    Related
    ENSP00000434373.1, ENST00000526729.1
  6. XM_011544840.2XP_011543142.1  coiled-coil domain-containing protein 83 isoform X1

    See identical proteins and their annotated locations for XP_011543142.1

    UniProtKB/Swiss-Prot
    Q8IWF9
    Conserved Domains (1) summary
    cl21456
    Location:80140
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
  7. XM_011544841.1XP_011543143.1  coiled-coil domain-containing protein 83 isoform X1

    See identical proteins and their annotated locations for XP_011543143.1

    UniProtKB/Swiss-Prot
    Q8IWF9
    Conserved Domains (1) summary
    cl21456
    Location:80140
    Periplasmic_Binding_Protein_Type_2; Type 2 periplasmic binding fold superfamily
  8. XM_011544844.2XP_011543146.1  coiled-coil domain-containing protein 83 isoform X6

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