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Tnfrsf9 tumor necrosis factor receptor superfamily, member 9 [ Mus musculus (house mouse) ]

Gene ID: 21942, updated on 2-Nov-2024

Summary

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Official Symbol
Tnfrsf9provided by MGI
Official Full Name
tumor necrosis factor receptor superfamily, member 9provided by MGI
Primary source
MGI:MGI:1101059
See related
Ensembl:ENSMUSG00000028965 AllianceGenome:MGI:1101059
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
ILA; Ly63; 4-1BB; Cd137; CDw137; A930040I11Rik
Summary
Enables signaling receptor activity. Acts upstream of or within regulation of immature T cell proliferation in thymus. Predicted to be located in external side of plasma membrane. Is expressed in renal vasculature. Human ortholog(s) of this gene implicated in primary immunodeficiency disease. Orthologous to human TNFRSF9 (TNF receptor superfamily member 9). [provided by Alliance of Genome Resources, Nov 2024]
Expression
Restricted expression toward placenta adult (RPKM 139.4) See more
Orthologs
human all
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Genomic context

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See Tnfrsf9 in Genome Data Viewer
Location:
4 E2; 4 81.52 cM
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 4 NC_000070.7 (151004612..151030561)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 4 NC_000070.6 (150920155..150946104)

Chromosome 4 - NC_000070.7Genomic Context describing neighboring genes Neighboring gene RIKEN cDNA 1700045H11 gene Neighboring gene STARR-positive B cell enhancer ABC_E10293 Neighboring gene ERBB receptor feedback inhibitor 1 Neighboring gene CapStarr-seq enhancer MGSCv37_chr4:150271076-150271277 Neighboring gene STARR-seq mESC enhancer starr_12178 Neighboring gene Parkinson disease (autosomal recessive, early onset) 7 Neighboring gene STARR-positive B cell enhancer ABC_E2733 Neighboring gene STARR-positive B cell enhancer ABC_E6289 Neighboring gene predicted gene, 23405 Neighboring gene predicted gene, 30120

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Biphasic role of 4-1BB in the regulation of mouse cytomegalovirus-specific CD8(+) T cells. Humphreys IR, et al. Eur J Immunol, 2010 Oct. PMID 20722077, Free PMC Article
  2. Functional dichotomy between OX40 and 4-1BB in modulating effector CD8 T cell responses. Lee SW, et al. J Immunol, 2006 Oct 1. PMID 16982882
  3. Amelioration of mercury-induced autoimmunity by 4-1BB. Vinay DS, et al. J Immunol, 2006 Oct 15. PMID 17015760
  4. Modulating protective and pathogenic CD4+ subsets via CD137 in type 1 diabetes. Irie J, et al. Diabetes, 2007 Jan. PMID 17192481
  5. 4-1BB costimulation of effector T cells for adoptive immunotherapy of cancer: involvement of Bcl gene family members. Kroon HM, et al. J Immunother, 2007 May-Jun. PMID 17457215

See all (240) citations in PubMed

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Targeting 4-1BB and PD-L1 induces potent and durable antitumor immunity in B-cell lymphoma.
    Title: Targeting 4-1BB and PD-L1 induces potent and durable antitumor immunity in B-cell lymphoma.
  2. CD137-CD137L Aggravates Calcification of Vascular Smooth Muscle Cell and Vasculature of ApoE[-/-] Mice Via Rab7-Mediated Autophagy.
    Title: CD137-CD137L Aggravates Calcification of Vascular Smooth Muscle Cell and Vasculature of ApoE(-/-) Mice Via Rab7-Mediated Autophagy.
  3. CD137 Regulates Bone Loss via the p53 Wnt/beta-Catenin Signaling Pathways in Aged Mice.
    Title: CD137 Regulates Bone Loss via the p53 Wnt/β-Catenin Signaling Pathways in Aged Mice.
  4. Activation of 4-1BB signaling in bone marrow stromal cells triggers bone loss via the p-38 MAPK-DKK1 axis in aged mice.
    Title: Activation of 4-1BB signaling in bone marrow stromal cells triggers bone loss via the p-38 MAPK-DKK1 axis in aged mice.
  5. EZH2 Inhibition Compromises alpha4-1BB-Mediated Antitumor Efficacy by Reducing the Survival and Effector Programming of CD8(+) T Cells.
    Title: EZH2 Inhibition Compromises α4-1BB-Mediated Antitumor Efficacy by Reducing the Survival and Effector Programming of CD8(+) T Cells.
  6. CD137 (4-1BB) costimulation of CD8(+) T cells is more potent when provided in cis than in trans with respect to CD3-TCR stimulation.
    Title: CD137 (4-1BB) costimulation of CD8(+) T cells is more potent when provided in cis than in trans with respect to CD3-TCR stimulation.
  7. Regulatory T Cells Inhibit T Cell Activity by Downregulating CD137 Ligand via CD137 Trogocytosis.
    Title: Regulatory T Cells Inhibit T Cell Activity by Downregulating CD137 Ligand via CD137 Trogocytosis.
  8. CD137 costimulation enhances the antiviral activity of Vgamma9Vdelta2-T cells against influenza virus.
    Title: CD137 costimulation enhances the antiviral activity of Vγ9Vδ2-T cells against influenza virus.
  9. Activating CD137 Signaling Promotes Sprouting Angiogenesis via Increased VEGFA Secretion and the VEGFR2/Akt/eNOS Pathway.
    Title: Activating CD137 Signaling Promotes Sprouting Angiogenesis via Increased VEGFA Secretion and the VEGFR2/Akt/eNOS Pathway.
  10. Activation of CD137 signaling promotes macrophage apoptosis dependent on p38 MAPK pathway-mediated mitochondrial fission.
    Title: Activation of CD137 signaling promotes macrophage apoptosis dependent on p38 MAPK pathway-mediated mitochondrial fission.
Submit: New GeneRIF Correction See all GeneRIFs (143)

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from PubChem

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Interactions

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Products Interactant Other Gene Complex Source Pubs Description

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
 PubMed 
enables signaling receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
  
enables signaling receptor activity IPI
Inferred from Physical Interaction
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
  
involved_in negative regulation of cell population proliferation IEA
Inferred from Electronic Annotation
more info
  
involved_in regulation of cell population proliferation IBA
Inferred from Biological aspect of Ancestor
more info
  
acts_upstream_of_or_within regulation of immature T cell proliferation in thymus IDA
Inferred from Direct Assay
more info
 PubMed 
Component Evidence Code Pubs
located_in external side of plasma membrane IEA
Inferred from Electronic Annotation
more info
  

General protein information

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Preferred Names
tumor necrosis factor receptor superfamily member 9
Names
4-1BB ligand receptor
CD137 antigen
T-cell antigen 4-1BB
secreted CD137 antigen

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001077508.1 → NP_001070976.1  tumor necrosis factor receptor superfamily member 9 isoform 2 precursor

    See identical proteins and their annotated locations for NP_001070976.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) lacks an alternate in-frame exon, compared to variant 1. It encodes isoform 2, which is a soluble form that lacks the transmembrane domain.
    Source sequence(s)
    AK019885, BC028507, BY206772, BY539760
    Consensus CDS
    CCDS38980.1
    UniProtKB/TrEMBL
    A2A887, Q8R037
    Related
    ENSMUSP00000101297.4, ENSMUST00000105672.10
    Conserved Domains (1) summary
    cd13410
    Location:23 → 160
    TNFRSF9; Tumor necrosis factor receptor superfamily member 9 (TNFRSF9), also known as CD137

  2. NM_001077509.1 → NP_001070977.1  tumor necrosis factor receptor superfamily member 9 isoform 1 precursor

    See identical proteins and their annotated locations for NP_001070977.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) differs in the 5' UTR compared to variant 1. Variants 1 and 3 encode the same protein (isoform 1).
    Source sequence(s)
    AK019885, BY196142, BY539760
    Consensus CDS
    CCDS18976.1
    UniProtKB/Swiss-Prot
    P20334
    UniProtKB/TrEMBL
    A2A888, Q3U3R1
    Related
    ENSMUSP00000111961.2, ENSMUST00000116257.8
    Conserved Domains (1) summary
    cd13410
    Location:23 → 160
    TNFRSF9; Tumor necrosis factor receptor superfamily member 9 (TNFRSF9), also known as CD137

  3. NM_011612.2 → NP_035742.1  tumor necrosis factor receptor superfamily member 9 isoform 1 precursor

    See identical proteins and their annotated locations for NP_035742.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript. Variants 1 and 3 encode the same protein (isoform 1).
    Source sequence(s)
    AK019885, BY206772, BY539760
    Consensus CDS
    CCDS18976.1
    UniProtKB/Swiss-Prot
    P20334
    UniProtKB/TrEMBL
    A2A888, Q3U3R1
    Related
    ENSMUSP00000030808.4, ENSMUST00000030808.10
    Conserved Domains (1) summary
    cd13410
    Location:23 → 160
    TNFRSF9; Tumor necrosis factor receptor superfamily member 9 (TNFRSF9), also known as CD137

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000070.7 Reference GRCm39 C57BL/6J

    Range
    151004612..151030561
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011250228.3 → XP_011248530.1  tumor necrosis factor receptor superfamily member 9 isoform X1

    See identical proteins and their annotated locations for XP_011248530.1

    UniProtKB/Swiss-Prot
    P20334
    UniProtKB/TrEMBL
    A2A888, Q3U3R1
    Related
    ENSMUSP00000101296.2, ENSMUST00000105671.8
    Conserved Domains (1) summary
    cd13410
    Location:23 → 160
    TNFRSF9; Tumor necrosis factor receptor superfamily member 9 (TNFRSF9), also known as CD137
Nucleotide Protein Strain
Heading Accession and Version
Protein Accession Links
GenPept Link UniProtKB Link
P20334.1 GenPept UniProtKB/Swiss-Prot:P20334

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

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