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Fam120a family with sequence similarity 120, member A [ Mus musculus (house mouse) ]

Gene ID: 218236, updated on 1-Mar-2024

Summary

Official Symbol
Fam120aprovided by MGI
Official Full Name
family with sequence similarity 120, member Aprovided by MGI
Primary source
MGI:MGI:2446163
See related
Ensembl:ENSMUSG00000038014 AllianceGenome:MGI:2446163
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ossa; C9orf10
Summary
Predicted to enable RNA binding activity. Predicted to be located in cytosol. Predicted to be active in nucleus. Is expressed in central nervous system; liver; and retina. Orthologous to human FAM120A (family with sequence similarity 120A). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in colon adult (RPKM 53.9), ovary adult (RPKM 52.9) and 28 other tissues See more
Orthologs
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Genomic context

See Fam120a in Genome Data Viewer
Location:
13 A5; 13 25.0 cM
Exon count:
19
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 13 NC_000079.7 (49032692..49121754, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 13 NC_000079.6 (48879216..48968060, complement)

Chromosome 13 - NC_000079.7Genomic Context describing neighboring genes Neighboring gene PHD finger protein 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:48940813-48940996 Neighboring gene PHD finger protein 2, opposite strand 1 Neighboring gene family with sequence similarity 120A, opposite strand Neighboring gene kinesin family member 11 pseudogene Neighboring gene STARR-seq mESC enhancer starr_34469 Neighboring gene WNK lysine deficient protein kinase 2 Neighboring gene CapStarr-seq enhancer MGSCv37_chr13:49185630-49185783

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (4) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Clone Names

  • KIAA0183

Gene Ontology Provided by MGI

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 
located_in cytosol ISO
Inferred from Sequence Orthology
more info
 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
constitutive coactivator of PPAR-gamma-like protein 1
Names
family with sequence similarity 120A
oxidative stress-associated Src activator

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001033268.3NP_001028440.2  constitutive coactivator of PPAR-gamma-like protein 1

    See identical proteins and their annotated locations for NP_001028440.2

    Status: VALIDATED

    Source sequence(s)
    AC109249, CT010439
    Consensus CDS
    CCDS49259.1
    UniProtKB/Swiss-Prot
    A0PJK6, B3DFJ0, Q6A0A9, Q91Z16
    Related
    ENSMUSP00000053877.7, ENSMUST00000060805.7
    Conserved Domains (1) summary
    cl28905
    Location:5220
    PIN_SF; PIN (PilT N terminus) domain: Superfamily

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000079.7 Reference GRCm39 C57BL/6J

    Range
    49032692..49121754 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_003950447.2 RNA Sequence

  2. XR_001780776.2 RNA Sequence