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Rundc1 RUN domain containing 1 [ Mus musculus (house mouse) ]

Gene ID: 217201, updated on 8-Dec-2022

Summary

Official Symbol
Rundc1provided by MGI
Official Full Name
RUN domain containing 1provided by MGI
Primary source
MGI:MGI:2144506
See related
Ensembl:ENSMUSG00000035007 AllianceGenome:MGI:2144506
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
D930024B17
Summary
Predicted to enable GTPase activator activity. Acts upstream of or within in utero embryonic development. Is expressed in central nervous system and retina. Orthologous to human RUNDC1 (RUN domain containing 1). [provided by Alliance of Genome Resources, Apr 2022]
Expression
Ubiquitous expression in ovary adult (RPKM 12.9), colon adult (RPKM 12.1) and 28 other tissues See more
Orthologs
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Genomic context

See Rundc1 in Genome Data Viewer
Location:
11; 11 D
Exon count:
6
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 11 NC_000077.7 (101315910..101326492)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 11 NC_000077.6 (101425085..101435666)

Chromosome 11 - NC_000077.7Genomic Context describing neighboring genes Neighboring gene alanyl-tRNA synthetase domain containing 1 Neighboring gene prostaglandin E synthase 3 like Neighboring gene microRNA 6929 Neighboring gene ribosomal protein L27 Neighboring gene interferon-induced protein 35

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Targeted (2) 

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC141375, MGC141376

General protein information

Preferred Names
RUN domain-containing protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_172566.4NP_766154.2  RUN domain-containing protein 1

    See identical proteins and their annotated locations for NP_766154.2

    Status: VALIDATED

    Source sequence(s)
    AK086362, AW125546, BC119592
    Consensus CDS
    CCDS25469.1
    UniProtKB/Swiss-Prot
    Q0VDN7, Q8C3C0
    Related
    ENSMUSP00000042151.6, ENSMUST00000040561.6
    Conserved Domains (1) summary
    cl02689
    Location:431582
    RUN; RUN domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000077.7 Reference GRCm39 C57BL/6J

    Range
    101315910..101326492
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006533035.5XP_006533098.1  RUN domain-containing protein 1 isoform X1

    Conserved Domains (2) summary
    TIGR04523
    Location:167291
    Mplasa_alph_rch; helix-rich Mycoplasma protein
    cl02689
    Location:433584
    RUN; RUN domain