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Sst somatostatin [ Mus musculus (house mouse) ]

Gene ID: 20604, updated on 20-Nov-2018

Summary

Official Symbol
Sstprovided by MGI
Official Full Name
somatostatinprovided by MGI
Primary source
MGI:MGI:98326
See related
Ensembl:ENSMUSG00000004366
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
SS; SOM; SRIF; Smst
Expression
Biased expression in stomach adult (RPKM 471.4), cortex adult (RPKM 146.8) and 9 other tissues See more
Orthologs

Genomic context

See Sst in Genome Data Viewer
Location:
16 B1; 16 15.0 cM
Exon count:
2
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 16 NC_000082.6 (23889581..23890844, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 16 NC_000082.5 (23889667..23890930, complement)

Chromosome 16 - NC_000082.6Genomic Context describing neighboring genes Neighboring gene ATP-binding cassette, sub-family E (OABP), member 1 pseudogene Neighboring gene predicted gene, 31430 Neighboring gene receptor transporter protein 2 Neighboring gene B cell leukemia/lymphoma 6

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Pathways from BioSystems

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
hormone activity IEA
Inferred from Electronic Annotation
more info
 
Process Evidence Code Pubs
regulation of cell migration IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of cell migration IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
extracellular region IEA
Inferred from Electronic Annotation
more info
 
extracellular space IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
extracellular space IDA
Inferred from Direct Assay
more info
PubMed 
extracellular space ISO
Inferred from Sequence Orthology
more info
 
neuronal cell body ISO
Inferred from Sequence Orthology
more info
 

General protein information

Preferred Names
somatostatin
Names
preprosomatostatin

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_009215.1NP_033241.1  somatostatin precursor

    See identical proteins and their annotated locations for NP_033241.1

    Status: PROVISIONAL

    Source sequence(s)
    X51468
    Consensus CDS
    CCDS28080.1
    UniProtKB/Swiss-Prot
    P60041
    UniProtKB/TrEMBL
    Q545V6
    Related
    ENSMUSP00000004480.3, ENSMUST00000004480.4
    Conserved Domains (1) summary
    pfam03002
    Location:99116
    Somatostatin; Somatostatin/Cortistatin family

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000082.6 Reference GRCm38.p4 C57BL/6J

    Range
    23889581..23890844 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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