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LYRM9 LYR motif containing 9 [ Homo sapiens (human) ]

Gene ID: 201229, updated on 13-May-2022

Summary

Official Symbol
LYRM9provided by HGNC
Official Full Name
LYR motif containing 9provided by HGNC
Primary source
HGNC:HGNC:27314
See related
Ensembl:ENSG00000232859 AllianceGenome:HGNC:27314
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
HSD24; C17orf108
Expression
Ubiquitous expression in thyroid (RPKM 12.9), brain (RPKM 12.4) and 25 other tissues See more
Orthologs
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Genomic context

See LYRM9 in Genome Data Viewer
Location:
17q11.2
Exon count:
8
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (27878358..27893365, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (28819756..28834759, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (26205384..26220391, complement)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene nitric oxide synthase 2 Neighboring gene NOS2 5' regulatory region Neighboring gene uncharacterized LOC124903961 Neighboring gene long intergenic non-protein coding RNA 1992 Neighboring gene uncharacterized LOC124903962 Neighboring gene Sharpr-MPRA regulatory region 4282

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Fraction of exhaled nitric oxide values in childhood are associated with 17q11.2-q12 and 17q12-q21 variants.
EBI GWAS Catalog

General gene information

Markers

Homology

General protein information

Preferred Names
LYR motif-containing protein 9
Names
UPF0631 protein C17orf108

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001076680.3NP_001070148.1  LYR motif-containing protein 9

    See identical proteins and their annotated locations for NP_001070148.1

    Status: VALIDATED

    Source sequence(s)
    AC005697, AI804732, DB474433, DR155808
    Consensus CDS
    CCDS45631.1
    UniProtKB/Swiss-Prot
    A8MSI8
    Related
    ENSP00000368396.3, ENST00000379102.8
    Conserved Domains (1) summary
    pfam13232
    Location:1170
    Complex1_LYR_1; Complex1_LYR-like

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    27878358..27893365 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_047435563.1XP_047291519.1  LYR motif-containing protein 9 isoform X3

  2. XM_047435562.1XP_047291518.1  LYR motif-containing protein 9 isoform X3

    Related
    ENSP00000368397.2, ENST00000379103.7
  3. XM_024450636.2XP_024306404.1  LYR motif-containing protein 9 isoform X2

    Conserved Domains (1) summary
    pfam05347
    Location:3795
    Complex1_LYR; Complex 1 protein (LYR family)
  4. XM_011524491.4XP_011522793.1  LYR motif-containing protein 9 isoform X1

    Conserved Domains (1) summary
    pfam13232
    Location:3796
    Complex1_LYR_1; Complex1_LYR-like

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    28819756..28834759 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)