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EMP1 epithelial membrane protein 1 [ Homo sapiens (human) ]

Gene ID: 2012, updated on 1-Jun-2020

Summary

Official Symbol
EMP1provided by HGNC
Official Full Name
epithelial membrane protein 1provided by HGNC
Primary source
HGNC:HGNC:3333
See related
Ensembl:ENSG00000134531 MIM:602333
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
TMP; CL-20; EMP-1
Expression
Biased expression in esophagus (RPKM 1426.7), gall bladder (RPKM 194.7) and 2 other tissues See more
Orthologs

Genomic context

See EMP1 in Genome Data Viewer
Location:
12p13.1
Exon count:
4
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (13196726..13219941)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (13349602..13369708)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC105369666 Neighboring gene germ cell associated 1 Neighboring gene Sharpr-MPRA regulatory region 6201 Neighboring gene Sharpr-MPRA regulatory region 3500 Neighboring gene long intergenic non-protein coding RNA 1559

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
bleb assembly IDA
Inferred from Direct Assay
more info
PubMed 
cell death IDA
Inferred from Direct Assay
more info
PubMed 
epidermis development TAS
Traceable Author Statement
more info
PubMed 
Component Evidence Code Pubs
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
epithelial membrane protein 1
Names
tumor-associated membrane protein

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001423.3NP_001414.1  epithelial membrane protein 1

    See identical proteins and their annotated locations for NP_001414.1

    Status: VALIDATED

    Source sequence(s)
    AC022276, BC047300, U77085
    Consensus CDS
    CCDS8660.1
    UniProtKB/Swiss-Prot
    P54849
    UniProtKB/TrEMBL
    A0A024RAT0
    Related
    ENSP00000256951.5, ENST00000256951.10
    Conserved Domains (1) summary
    pfam00822
    Location:1151
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    13196726..13219941
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024448877.1XP_024304645.1  epithelial membrane protein 1 isoform X1

    Conserved Domains (1) summary
    pfam00822
    Location:1186
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
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