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FAM209A family with sequence similarity 209 member A [ Homo sapiens (human) ]

Gene ID: 200232, updated on 11-Sep-2019

Summary

Official Symbol
FAM209Aprovided by HGNC
Official Full Name
family with sequence similarity 209 member Aprovided by HGNC
Primary source
HGNC:HGNC:16100
See related
Ensembl:ENSG00000124103
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C20orf106; dJ1153D9.3
Expression
Restricted expression toward testis (RPKM 36.8) See more
Orthologs

Genomic context

See FAM209A in Genome Data Viewer
Location:
20q13.31
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 20 NC_000020.11 (56524729..56533590)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (55099785..55101208)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene Cas scaffold protein family member 4 Neighboring gene ribosomal protein L39 pseudogene Neighboring gene replication termination factor 2 Neighboring gene uncharacterized LOC105372681 Neighboring gene glucosaminyl (N-acetyl) transferase family member 7 Neighboring gene family with sequence similarity 209 member B Neighboring gene long intergenic non-protein coding RNA 1716 Neighboring gene ribosomal protein S4X pseudogene 3

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

NHGRI GWAS Catalog

Description
A genome-wide search for quantitative trait loci affecting the cortical surface area and thickness of Heschl's gyrus.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC104272

Gene Ontology Provided by GOA

Function Evidence Code Pubs
molecular_function ND
No biological Data available
more info
 
Process Evidence Code Pubs
biological_process ND
No biological Data available
more info
 
Component Evidence Code Pubs
extracellular exosome HDA PubMed 
integral component of membrane IEA
Inferred from Electronic Annotation
more info
 
nucleus HDA PubMed 

General protein information

Preferred Names
protein FAM209A
Names
uncharacterized protein C20orf106

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001012971.3NP_001012989.2  protein FAM209A precursor

    See identical proteins and their annotated locations for NP_001012989.2

    Status: VALIDATED

    Source sequence(s)
    BC070179, BU738481, BX335293
    Consensus CDS
    CCDS33493.1
    UniProtKB/Swiss-Prot
    Q5JX71
    Related
    ENSP00000360379.3, ENST00000371328.4
    Conserved Domains (1) summary
    pfam15206
    Location:20168
    FAM209; FAM209 family

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p13 Primary Assembly

    Range
    56524729..56533590
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

RNA

  1. XR_001754199.1 RNA Sequence

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