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Rny3 RNA, Y3 small cytoplasmic (associated with Ro protein) [ Mus musculus (house mouse) ]

Gene ID: 19874, updated on 8-Feb-2024

Summary

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Official Symbol
Rny3provided by MGI
Official Full Name
RNA, Y3 small cytoplasmic (associated with Ro protein)provided by MGI
Primary source
MGI:MGI:107304
See related
Ensembl:ENSMUSG00000064945 AllianceGenome:MGI:107304
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Summary
Acts upstream of or within DNA replication initiation and nuclear DNA replication. Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
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Genomic context

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See Rny3 in Genome Data Viewer
Location:
6 B2.3; 6 22.94 cM
Exon count:
1
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (47758558..47758658)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (47781624..47781724)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene STARR-positive B cell enhancer mm9_chr6:47636636-47636937 Neighboring gene predicted gene, 40363 Neighboring gene predicted gene, 52861 Neighboring gene STARR-positive B cell enhancer ABC_E2783 Neighboring gene STARR-positive B cell enhancer ABC_E438 Neighboring gene ribosomal protein L31, pseudogene 7 Neighboring gene RNA, Y1 small cytoplasmic, Ro-associated

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Y RNA functions at the initiation step of mammalian chromosomal DNA replication. Krude T, et al. J Cell Sci, 2009 Aug 15. PMID 19657016
  2. Ro60 requires Y3 RNA for cell surface exposure and inflammation associated with cardiac manifestations of neonatal lupus. Reed JH, et al. J Immunol, 2013 Jul 1. PMID 23698747, Free PMC Article
  3. Genes for murine Y1 and Y3 Ro RNAs have class 3 RNA polymerase III promoter structures and are unlinked on mouse chromosome 6. Farris AD, et al. Gene, 1996 Sep 26. PMID 8863726
  4. Mapping of the mouse corticotropin-releasing hormone receptor 2 gene (Crhr2) to chromosome 6. Lesh JS, et al. Mamm Genome, 1997 Dec. PMID 9383293

GeneRIFs: Gene References Into Functions

Variation

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Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)
  • Endonuclease-mediated (1) 

General gene information

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Gene Ontology Provided by MGI

Process Evidence Code Pubs
acts_upstream_of_or_within DNA replication initiation IMP
Inferred from Mutant Phenotype
more info
 PubMed 
acts_upstream_of_or_within nuclear DNA replication IMP
Inferred from Mutant Phenotype
more info
 PubMed 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024202.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC166252
    Related
    ENSMUST00000083011.3

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    47758558..47758658
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
Nucleotide Protein Strain
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.