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RMST rhabdomyosarcoma 2 associated transcript [ Homo sapiens (human) ]

Gene ID: 196475, updated on 23-Nov-2021

Summary

Official Symbol
RMSTprovided by HGNC
Official Full Name
rhabdomyosarcoma 2 associated transcriptprovided by HGNC
Primary source
HGNC:HGNC:29893
See related
Ensembl:ENSG00000255794 MIM:607045
Gene type
ncRNA
RefSeq status
REVIEWED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
NCRMS; LINC00054; NCRNA00054
Summary
This gene produces a long non-coding RNA that functions in neurogenesis by aiding in the association of Sox2 transcription factor to its target promoters. [provided by RefSeq, Dec 2017]
Expression
Biased expression in thyroid (RPKM 2.9), prostate (RPKM 0.5) and 1 other tissue See more
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Genomic context

See RMST in Genome Data Viewer
Location:
12q23.1; 12q21
Exon count:
14
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 12 NC_000012.12 (97462776..97565015)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 12 NC_000012.11 (97856554..97958793)

Chromosome 12 - NC_000012.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC101928912 Neighboring gene uncharacterized LOC105369930 Neighboring gene long intergenic non-protein coding RNA 2409 Neighboring gene microRNA 1251 Neighboring gene microRNA 135a-2 Neighboring gene NFE2L2 motif-containing MPRA enhancer 214 Neighboring gene PAFAH1B2 pseudogene 2 Neighboring gene RNA, U6 small nuclear 36, pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

EBI GWAS Catalog

Description
Genome-wide SNP and CNV analysis identifies common and low-frequency variants associated with severe early-onset obesity.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • long intergenic non-protein coding RNA 54
  • non-coding RNA in rhabdomyosarcoma (RMS)
  • rhabdomyosarcoma 2 associated transcript (non-coding RNA)
  • rhabdomyosarcoma 2 associated transcript (non-protein coding)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024037.2 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC007351, AK056164, DA746093
    Related
    ENST00000541282.5
  2. NR_152618.1 RNA Sequence

    Status: REVIEWED

    Source sequence(s)
    AC007351, AC018659
    Related
    ENST00000670745.1

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000012.12 Reference GRCh38.p13 Primary Assembly

    Range
    97462776..97565015
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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