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PFL1_02540 uncharacterized protein [ Pseudozyma flocculosa PF-1 ]

Gene ID: 19316659, updated on 30-Nov-2023

Summary

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Gene symbol
PFL1_02540
Gene description
uncharacterized protein
Locus tag
PFL1_02540
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Pseudozyma flocculosa PF-1 (strain: PF-1)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Ustilaginomycotina; Ustilaginomycetes; Ustilaginales; Ustilaginaceae; Pseudozyma
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Genomic context

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See PFL1_02540 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_006920875.1Genomic Context describing neighboring genes Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein Neighboring gene uncharacterized protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006920875.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. The transition from a phytopathogenic smut ancestor to an anamorphic biocontrol agent deciphered by comparative whole-genome analysis. Lefebvre F, et al. Plant Cell, 2013 Jun. PMID 23800965, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3-dehydroquinate dehydratase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 3-dehydroquinate synthase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables 3-phosphoshikimate 1-carboxyvinyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables shikimate 3-dehydrogenase (NADP+) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables shikimate kinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in aromatic amino acid family biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in chorismate biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
uncharacterized protein
XP_007878247.1
  • probable pentafunctional arom polypeptide

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_006920875.1 Reference assembly

    Range
    317284..322401
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007880056.1 → XP_007878247.1  uncharacterized protein PFL1_02540 [Pseudozyma flocculosa PF-1]

    See identical proteins and their annotated locations for XP_007878247.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    A0A061HAC0, A0A5C3EY19
    Conserved Domains (5) summary
    COG0169
    Location:1400 → 1704
    AroE; Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
    cd00464
    Location:943 → 1097
    SK; Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis ...
    cd01556
    Location:442 → 886
    EPSP_synthase; EPSP synthase domain. 3-phosphoshikimate 1-carboxyvinyltransferase (5-enolpyruvylshikimate-3-phosphate synthase) (EC 2.5.1.19) catalyses the reaction between shikimate-3-phosphate (S3P) and phosphoenolpyruvate (PEP) to form ...
    cd08195
    Location:37 → 423
    DHQS; Dehydroquinate synthase (DHQS) catalyzes the conversion of DAHP to DHQ in shikimate pathway for aromatic compounds synthesis
    pfam01487
    Location:1158 → 1391
    DHquinase_I; Type I 3-dehydroquinase
Nucleotide Protein
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