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FOMMEDRAFT_155252 DNA ligase I [ Fomitiporia mediterranea MF3/22 ]

Gene ID: 18674457, updated on 14-Dec-2023

Summary

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Gene symbol
FOMMEDRAFT_155252
Gene description
DNA ligase I
Locus tag
FOMMEDRAFT_155252
Gene type
protein coding
RNA name
DNA ligase I
RefSeq status
PROVISIONAL
Organism
Fomitiporia mediterranea MF3/22 (strain: MF3/22)
Lineage
Eukaryota; Fungi; Dikarya; Basidiomycota; Agaricomycotina; Agaricomycetes; Hymenochaetales; Hymenochaetaceae; Fomitiporia
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Genomic context

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Location:
chromosome: Unknown
Exon count:
18

NW_006760390.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene UPF0041-domain-containing protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006760390.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in Okazaki fragment processing involved in mitotic DNA replication IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase I

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_006760390.1 Reference assembly

    Range
    2080855..2084395
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007265666.1 → XP_007265728.1  DNA ligase I [Fomitiporia mediterranea MF3/22]

    See identical proteins and their annotated locations for XP_007265728.1

    Status: PROVISIONAL

    Conserved Domains (4) summary
    cd07969
    Location:683 → 826
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:459 → 678
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    TIGR00574
    Location:282 → 825
    dnl1; DNA ligase I, ATP-dependent (dnl1)
    pfam04675
    Location:220 → 394
    DNA_ligase_A_N; DNA ligase N terminus
Protein Accession Links
GenPept Link UniProtKB Link
EJD04127.1

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Other Literature Sources
Molecular Biology Databases