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LOC18421647 probable polyribonucleotide nucleotidyltransferase 1, chloroplastic [ Amborella trichopoda ]

Gene ID: 18421647, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18421647
Gene description
probable polyribonucleotide nucleotidyltransferase 1, chloroplastic
Locus tag
AMTR_s00004p00095690
Gene type
protein coding
RefSeq status
MODEL
Organism
Amborella trichopoda
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; Amborellales; Amborellaceae; Amborella
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Genomic context

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Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
101 current AMTR1.0 (GCF_000471905.2) Unplaced Scaffold NW_006494789.1 (1137644..1166216)

NW_006494789.1Genomic Context describing neighboring genes Neighboring gene general negative regulator of transcription subunit 3 Neighboring gene pentatricopeptide repeat-containing protein ELI1, chloroplastic-like Neighboring gene replication factor C subunit 5 Neighboring gene microfibrillar-associated protein 1

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006494789.1 Unplaced Scaffold Reference AMTR1.0 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyribonucleotide nucleotidyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mitochondrial RNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast stroma IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytosol IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable polyribonucleotide nucleotidyltransferase 1, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Amborella trichopoda Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AMTR1.0 Primary Assembly

Genomic

  1. NW_006494789.1 Reference AMTR1.0 Primary Assembly

    Range
    1137644..1166216
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_020669927.1 → XP_020525586.1  probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X2

    Conserved Domains (1) summary
    PLN00207
    Location:41 → 822
    PLN00207; polyribonucleotide nucleotidyltransferase; Provisional

  2. XM_006826261.3 → XP_006826324.1  probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X1

    See identical proteins and their annotated locations for XP_006826324.1

    UniProtKB/TrEMBL
    W1NDW9
    Conserved Domains (6) summary
    cd11364
    Location:457 → 685
    RNase_PH_PNPase_2; Polyribonucleotide nucleotidyltransferase, repeat 2
    PLN00207
    Location:41 → 904
    PLN00207; polyribonucleotide nucleotidyltransferase; Provisional
    cd02393
    Location:694 → 754
    PNPase_KH; Polynucleotide phosphorylase (PNPase) K homology RNA-binding domain (KH). PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA in prokaryotes and plant chloroplasts. The C-terminal region of PNPase contains domains homologous to ...
    cd04472
    Location:764 → 832
    S1_PNPase; S1_PNPase: Polynucleotide phosphorylase (PNPase), ), S1-like RNA-binding domain. PNPase is a polyribonucleotide nucleotidyl transferase that degrades mRNA. It is a trimeric multidomain protein. The C-terminus contains the S1 domain which binds ssRNA. ...
    pfam03726
    Location:326 → 453
    PNPase; Polyribonucleotide nucleotidyltransferase, RNA binding domain
    cl03114
    Location:90 → 316
    RNase_PH; RNase PH-like 3'-5' exoribonucleases

  3. XM_020669972.1 → XP_020525631.1  probable polyribonucleotide nucleotidyltransferase 1, chloroplastic isoform X3

    Conserved Domains (1) summary
    cl28027
    Location:52 → 780
    PNPase; Polyribonucleotide nucleotidyltransferase, RNA binding domain
Nucleotide Protein
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