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LOC18008116 ATP-dependent zinc metalloprotease FTSH 12, chloroplastic [ Eutrema salsugineum ]

Gene ID: 18008116, updated on 21-Dec-2023

Summary

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Gene symbol
LOC18008116
Gene description
ATP-dependent zinc metalloprotease FTSH 12, chloroplastic
Locus tag
EUTSA_v100180710mg
Gene type
protein coding
RefSeq status
MODEL
Organism
Eutrema salsugineum
Lineage
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Eutremeae; Eutrema
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Genomic context

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Location:
chromosome: Un
Exon count:
19
Annotation release Status Assembly Chr Location
100 current Eutsalg1_0 (GCF_000478725.1) Unplaced Scaffold NW_006256342.1 (551012..557142, complement)

NW_006256342.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC18008984 Neighboring gene putative F-box/FBD/LRR-repeat protein At1g22000 Neighboring gene phosphoglycerate kinase 3, cytosolic Neighboring gene pentatricopeptide repeat-containing protein At1g79540

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006256342 Unplaced Scaffold Reference Eutsalg1_0

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP hydrolysis activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent peptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in embryo development ending in seed dormancy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mitochondrial protein processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein-containing complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in chloroplast thylakoid membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of m-AAA complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ATP-dependent zinc metalloprotease FTSH 12, chloroplastic

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Eutrema salsugineum Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Eutsalg1_0

Genomic

  1. NW_006256342.1 Reference Eutsalg1_0

    Range
    551012..557142 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006389814.2 → XP_006389876.2  ATP-dependent zinc metalloprotease FTSH 12, chloroplastic

    UniProtKB/TrEMBL
    V4KBQ2
    Conserved Domains (1) summary
    cl27568
    Location:429 → 927
    TIP49; TIP49 C-terminus
Nucleotide Protein
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