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Ndufa4 Ndufa4, mitochondrial complex associated [ Mus musculus (house mouse) ]

Gene ID: 17992, updated on 9-Sep-2018

Summary

Official Symbol
Ndufa4provided by MGI
Official Full Name
Ndufa4, mitochondrial complex associatedprovided by MGI
Primary source
MGI:MGI:107686
See related
Ensembl:ENSMUSG00000029632 Vega:OTTMUSG00000057021
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
MLRQ
Expression
Ubiquitous expression in heart adult (RPKM 799.9), kidney adult (RPKM 524.7) and 27 other tissues See more
Orthologs

Genomic context

See Ndufa4 in Genome Data Viewer
Location:
6; 6 A1
Exon count:
4
Annotation release Status Assembly Chr Location
106 current GRCm38.p4 (GCF_000001635.24) 6 NC_000072.6 (11900373..11907446, complement)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 6 NC_000072.5 (11850373..11857446, complement)

Chromosome 6 - NC_000072.6Genomic Context describing neighboring genes Neighboring gene predicted gene, 35822 Neighboring gene EST AA545190 Neighboring gene PHD finger protein 14 Neighboring gene predicted gene, 32222 Neighboring gene mitochondrial ribosomal protein L32 pseudogene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Pathways from BioSystems

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Gene Ontology Provided by MGI

Function Evidence Code Pubs
contributes_to cytochrome-c oxidase activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
contributes_to cytochrome-c oxidase activity ISO
Inferred from Sequence Orthology
more info
 
protein-containing complex binding ISO
Inferred from Sequence Orthology
more info
PubMed 
Process Evidence Code Pubs
oxidation-reduction process IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
membrane IEA
Inferred from Electronic Annotation
more info
 
mitochondrial inner membrane HDA PubMed 
NOT mitochondrial respiratory chain complex I IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitochondrial respiratory chain complex IV IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitochondrial respiratory chain complex IV IDA
Inferred from Direct Assay
more info
PubMed 
mitochondrial respiratory chain complex IV ISO
Inferred from Sequence Orthology
more info
 
mitochondrion HDA PubMed 
mitochondrion ISO
Inferred from Sequence Orthology
more info
 
respiratory chain IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
cytochrome c oxidase subunit NDUFA4
NP_035016.1

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_010886.3NP_035016.1  cytochrome c oxidase subunit NDUFA4

    See identical proteins and their annotated locations for NP_035016.1

    Status: VALIDATED

    Source sequence(s)
    AK076036, AW045432, BM951472
    Consensus CDS
    CCDS39427.1
    UniProtKB/Swiss-Prot
    Q62425
    Related
    ENSMUSP00000144932.1, OTTMUSP00000073595, ENSMUST00000204978.2
    Conserved Domains (1) summary
    pfam06522
    Location:1179
    B12D; NADH-ubiquinone reductase complex 1 MLRQ subunit

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 106

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm38.p4 C57BL/6J

Genomic

  1. NC_000072.6 Reference GRCm38.p4 C57BL/6J

    Range
    11900373..11907446 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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