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CHC_T00002083001 hypothetical protein [ Chondrus crispus (carragheen) ]

Gene ID: 17320713, updated on 16-Nov-2023

Summary

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Gene symbol
CHC_T00002083001
Gene description
hypothetical protein
Locus tag
CHC_T00002083001
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Chondrus crispus (strain: Stackhouse)
Lineage
Eukaryota; Rhodophyta; Florideophyceae; Rhodymeniophycidae; Gigartinales; Gigartinaceae; Chondrus
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Genomic context

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Exon count:
2

NW_005178986.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene Serine/threonine protein kinase Neighboring gene hypothetical protein Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178986.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida. Collén J, et al. Proc Natl Acad Sci U S A, 2013 Mar 26. PMID 23503846, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

3'UTR

  • Loc: 205765-206175

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178986.1 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005712932.1 → XP_005712989.1  unnamed protein product [Chondrus crispus]

    See identical proteins and their annotated locations for XP_005712989.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    R7Q730
    Conserved Domains (5) summary
    smart00982
    Location:792 → 880
    TRCF; This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli
    smart00487
    Location:382 → 571
    DEXDc; DEAD-like helicases superfamily
    cd00046
    Location:407 → 545
    DEXDc; DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
    cd00079
    Location:584 → 700
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    pfam02559
    Location:239 → 350
    CarD_CdnL_TRCF; CarD-like/TRCF domain
Nucleotide Protein
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