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VPS39 vacuolar protein sorting 39 [ Emiliania huxleyi CCMP1516 ]

Gene ID: 17275952, updated on 28-Dec-2023

Summary

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Gene symbol
VPS39
Gene description
vacuolar protein sorting 39
Locus tag
EMIHUDRAFT_456464
Gene type
protein coding
RNA name
vacuolar protein sorting 39
RefSeq status
PROVISIONAL
Organism
Emiliania huxleyi CCMP1516 (strain: CCMP1516)
Lineage
Eukaryota; Haptophyceae; Isochrysidales; Noelaerhabdaceae; Emiliania
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Genomic context

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Location:
chromosome: Unknown
Exon count:
8

NW_005200763.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene cytochrome C peroxidase Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005200763.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Pan genome of the phytoplankton Emiliania underpins its global distribution. Read BA, et al. Nature, 2013 Jul 11. PMID 23760476

GeneRIFs: Gene References Into Functions

General gene information

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Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in autophagy IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in endosomal vesicle fusion IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
vacuolar protein sorting 39

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005200763.1 Reference assembly

    Range
    22724..24976 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005783051.1 → XP_005783108.1  vacuolar protein sorting 39 [Emiliania huxleyi CCMP1516]

    See identical proteins and their annotated locations for XP_005783108.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    R1FBN2
    Conserved Domains (1) summary
    pfam10367
    Location:281 → 387
    Vps39_2; Vacuolar sorting protein 39 domain 2
Nucleotide Protein
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Gene LinkOut

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