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Gasu_24280 DNA ligase 1 [ Galdieria sulphuraria ]

Gene ID: 17089018, updated on 6-Jan-2024

Summary

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Gene symbol
Gasu_24280
Gene description
DNA ligase 1
Locus tag
Gasu_24280
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Galdieria sulphuraria (strain: 074W)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Galdieriales; Galdieriaceae; Galdieria
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Genomic context

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See Gasu_24280 in Genome Data Viewer
Location:
chromosome: Unknown
Exon count:
1

NW_005178458.1Genomic Context describing neighboring genes Neighboring gene exodeoxyribonuclease III Neighboring gene lipoyl(octanoyl) transferase isoform 1;lipoyl(octanoyl) transferase isoform 2 Neighboring gene heat shock factor binding protein 1 isoform 1;heat shock factor binding protein 1 isoform 2 Neighboring gene 6,7-dimethyl-8-ribityllumazine synthase Neighboring gene peptidase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_005178458.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene transfer from bacteria and archaea facilitated evolution of an extremophilic eukaryote. Schönknecht G, et al. Science, 2013 Mar 8. PMID 23471408

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
DNA ligase 1
XP_005706800.1

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_005178458.1 Reference assembly

    Range
    131991..134298
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005706743.1 → XP_005706800.1  DNA ligase 1 [Galdieria sulphuraria]

    See identical proteins and their annotated locations for XP_005706800.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M2X1Q8
    Conserved Domains (4) summary
    cd07969
    Location:587 → 734
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:361 → 582
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:20 → 738
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:128 → 299
    DNA_ligase_A_N; DNA ligase N terminus
Nucleotide Protein
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Gene LinkOut

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Other Literature Sources
Molecular Biology Databases