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CYME_CMS302C 5'->3' exoribonuclease [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16997194, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CMS302C
Gene description
5'->3' exoribonuclease
Locus tag
CYME_CMS302C
Gene type
protein coding
RNA name
5'->3' exoribonuclease
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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Location:
chromosome: 19
Exon count:
1
Sequence:
Chromosome: 19; NC_010145.1 (777791..781882)

Chromosome 19 - NC_010145.1Genomic Context describing neighboring genes Neighboring gene biotin carboxylase, chloroplast precursor Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene probable ubiquitin conjugating enzyme E2

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010145.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 5'-3' RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in nuclear-transcribed mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
5'->3' exoribonuclease

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010145.1 Reference assembly

    Range
    777791..781882
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005538871.1 → XP_005538928.1  5'->3' exoribonuclease [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005538928.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1VHN0
    Conserved Domains (2) summary
    COG5049
    Location:1 → 970
    XRN1; 5'-3' exonuclease [Replication, recombination and repair]
    pfam03159
    Location:1 → 263
    XRN_N; XRN 5'-3' exonuclease N-terminus
Nucleotide Protein
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