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CYME_CMR402C similar to rotamase/parvulin-type peptidyl-prolyl cis-trans isomerase [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16997074, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CMR402C
Gene description
similar to rotamase/parvulin-type peptidyl-prolyl cis-trans isomerase
Locus tag
CYME_CMR402C
Gene type
protein coding
RNA name
similar to rotamase/parvulin-type peptidyl-prolyl cis-trans isomerase
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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Location:
chromosome: 18
Exon count:
1
Sequence:
Chromosome: 18; NC_010144.1 (985290..985673)

Chromosome 18 - NC_010144.1Genomic Context describing neighboring genes Neighboring gene unknown kinase with aarF domain Neighboring gene transposon Neighboring gene cytochrome c oxidase subunit VIb Neighboring gene similar to retromer component VPS29

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010144.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in rRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
similar to rotamase/parvulin-type peptidyl-prolyl cis-trans isomerase

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010144.1 Reference assembly

    Range
    985290..985673
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005538567.1 → XP_005538624.1  similar to rotamase/parvulin-type peptidyl-prolyl cis-trans isomerase [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005538624.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1VLJ8
    Conserved Domains (2) summary
    COG0760
    Location:29 → 126
    SurA; Parvulin-like peptidyl-prolyl isomerase [Posttranslational modification, protein turnover, chaperones]
    pfam00639
    Location:33 → 124
    Rotamase; PPIC-type PPIASE domain
Nucleotide Protein
Heading Accession and Version

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