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CYME_CML055C carbamoyl-phosphate synthase, pyrimidine-specific, large chain [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16994829, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CML055C
Gene description
carbamoyl-phosphate synthase, pyrimidine-specific, large chain
Locus tag
CYME_CML055C
Gene type
protein coding
RNA name
carbamoyl-phosphate synthase, pyrimidine-specific, large chain
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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Location:
chromosome: 12
Exon count:
1
Sequence:
Chromosome: 12; NC_010138.1 (112961..116911, complement)

Chromosome 12 - NC_010138.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene miscRNA Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene unknown kinase with aarF domain

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010138.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in glutamine metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
carbamoyl-phosphate synthase, pyrimidine-specific, large chain

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010138.1 Reference assembly

    Range
    112961..116911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005536657.1 → XP_005536714.1  carbamoyl-phosphate synthase, pyrimidine-specific, large chain [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005536714.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1VI31
    Conserved Domains (4) summary
    PRK05294
    Location:143 → 1278
    carB; carbamoyl phosphate synthase large subunit; Reviewed
    pfam02787
    Location:569 → 694
    CPSase_L_D3; Carbamoyl-phosphate synthetase large chain, oligomerization domain
    cl00245
    Location:1149 → 1246
    MGS-like; MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate ...
    cl17255
    Location:271 → 477
    ATP-grasp_4; ATP-grasp domain
Nucleotide Protein
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