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CYME_CMJ197C similar to smooth muscle caldesmon [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16994078, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CMJ197C
Gene description
similar to smooth muscle caldesmon
Locus tag
CYME_CMJ197C
Gene type
protein coding
RNA name
similar to smooth muscle caldesmon
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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Location:
chromosome: 10
Exon count:
1
Sequence:
Chromosome: 10; NC_010136.1 (531837..532847)

Chromosome 10 - NC_010136.1Genomic Context describing neighboring genes Neighboring gene similar to outward rectifying potassium channel KCO Neighboring gene hypothetical protein Neighboring gene similar to protoporphyrinogen oxidase HemK Neighboring gene similar to UMP/CMP kinase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010136.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP-dependent H2AZ histone chaperone activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
similar to smooth muscle caldesmon

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010136.1 Reference assembly

    Range
    531837..532847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005534865.1 → XP_005534922.1  similar to smooth muscle caldesmon [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005534922.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1V5A2
    Conserved Domains (1) summary
    pfam05764
    Location:15 → 235
    YL1; YL1 nuclear protein
Nucleotide Protein
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