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CYME_CMG220C similar to hedgehog protein [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16993195, updated on 21-Dec-2023

Summary

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Gene symbol
CYME_CMG220C
Gene description
similar to hedgehog protein
Locus tag
CYME_CMG220C
Gene type
protein coding
RNA name
similar to hedgehog protein
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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Location:
chromosome: 7
Exon count:
1
Sequence:
Chromosome: 7; NC_010133.1 (578942..581128)

Chromosome 7 - NC_010133.1Genomic Context describing neighboring genes Neighboring gene cytochrome c reductase hinge protein Neighboring gene NADPH:protochlorophyllide oxidoreductase

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010133.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables patched binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell-cell signaling IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in intein-mediated protein splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in multicellular organism development IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein autoprocessing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in smoothened signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
similar to hedgehog protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010133.1 Reference assembly

    Range
    578942..581128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005535938.1 → XP_005535995.1  similar to hedgehog protein [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005535995.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1V7E5
    Conserved Domains (4) summary
    cd00081
    Location:487 → 660
    Hint; Hedgehog/Intein domain, found in Hedgehog proteins as well as proteins which contain inteins and undergo protein splicing (e.g. DnaB, RIR1-2, GyrA and Pol). In protein splicing an intervening polypeptide sequence - the intein - is excised from a protein, ...
    sd00038
    Location:202 → 266
    Kelch; KELCH repeat [structural motif]
    pfam01079
    Location:487 → 708
    Hint; Hint module
    pfam13418
    Location:270 → 314
    Kelch_4; Galactose oxidase, central domain
Nucleotide Protein
Heading Accession and Version

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