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CYME_CMF177C similar to polymyositis-scleroderma overlap syndrome associated autoantigen [ Cyanidioschyzon merolae strain 10D ]

Gene ID: 16992963, updated on 11-Apr-2024

Summary

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Gene symbol
CYME_CMF177C
Gene description
similar to polymyositis-scleroderma overlap syndrome associated autoantigen
Locus tag
CYME_CMF177C
Gene type
protein coding
RNA name
similar to polymyositis-scleroderma overlap syndrome associated autoantigen
RefSeq status
PROVISIONAL
Organism
Cyanidioschyzon merolae strain 10D (strain: 10D)
Lineage
Eukaryota; Rhodophyta; Bangiophyceae; Cyanidiales; Cyanidiaceae; Cyanidioschyzon
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Genomic context

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Location:
chromosome: 6
Exon count:
1
Sequence:
Chromosome: 6; NC_010132.1 (494306..495784)

Chromosome 6 - NC_010132.1Genomic Context describing neighboring genes Neighboring gene similar to tight junction plaque protein Symplekin Neighboring gene similar to lysophospholipase II Neighboring gene hypothetical protein Neighboring gene glutamyl-tRNA amidotransferase subunit B

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_010132.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A 100%-complete sequence reveals unusually simple genomic features in the hot-spring red alga Cyanidioschyzon merolae. Nozaki H, et al. BMC Biol, 2007 Jul 10. PMID 17623057, Free PMC Article
  2. Genome sequence of the ultrasmall unicellular red alga Cyanidioschyzon merolae 10D. Matsuzaki M, et al. Nature, 2004 Apr 8. PMID 15071595

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables 3'-5'-RNA exonuclease activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables nucleotide binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in TRAMP-dependent tRNA surveillance pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in exonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA) IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in histone mRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent CUT catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent antisense transcript catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent rRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent snRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in nuclear polyadenylation-dependent snoRNA catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in poly(A)-dependent snoRNA 3'-end processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of nuclear exosome (RNase complex) IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleolus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
similar to polymyositis-scleroderma overlap syndrome associated autoantigen

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_010132.1 Reference assembly

    Range
    494306..495784
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005535757.1 → XP_005535814.1  similar to polymyositis-scleroderma overlap syndrome associated autoantigen [Cyanidioschyzon merolae strain 10D]

    See identical proteins and their annotated locations for XP_005535814.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    M1VFZ9
    Conserved Domains (2) summary
    pfam00570
    Location:359 → 406
    HRDC; HRDC domain
    cl10012
    Location:132 → 325
    DnaQ_like_exo; DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily
Nucleotide Protein
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