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Klra10 killer cell lectin-like receptor subfamily A, member 10 [ Mus musculus (house mouse) ]

Gene ID: 16628, updated on 17-Aug-2024

Summary

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Official Symbol
Klra10provided by MGI
Official Full Name
killer cell lectin-like receptor subfamily A, member 10provided by MGI
Primary source
MGI:MGI:1321093
See related
Ensembl:ENSMUSG00000072718 AllianceGenome:MGI:1321093
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Ly49J; Ly49i2
Summary
Predicted to be located in plasma membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Low expression observed in reference dataset See more
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Genomic context

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Location:
6 F3; 6 63.44 cM
Exon count:
8
Annotation release Status Assembly Chr Location
RS_2024_02 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (130243330..130260698, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (130269194..130283647, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene killer cell lectin-like receptor subfamily A, member 9 Neighboring gene predicted gene, 52487 Neighboring gene killer cell lectin-like receptor, subfamily A, member 7 Neighboring gene killer cell lectin-like receptor subfamily A, member 13, pseudogene Neighboring gene predicted gene, 24072

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Mouse ENCODE transcriptome data Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

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Related articles in PubMed

  1. Expression analysis of new Ly49 genes: most transcripts of Ly49j lack the transmembrane domain. McQueen KL, et al. Immunogenetics, 1999 Jul. PMID 10369927
  2. Localization of five new Ly49 genes, including three closely related to Ly49c. McQueen KL, et al. Immunogenetics, 1998 Aug. PMID 9683662
  3. A BAC contig map of the Ly49 gene cluster in 129 mice reveals extensive differences in gene content relative to C57BL/6 mice. Makrigiannis AP, et al. Genomics, 2002 Mar. PMID 11863373
  4. Class I MHC-binding characteristics of the 129/J Ly49 repertoire. Makrigiannis AP, et al. J Immunol, 2001 Apr 15. PMID 11290784
  5. The ly49 gene family. A brief guide to the nomenclature, genetics, and role in intracellular infection. Schenkel AR, et al. Front Immunol, 2013. PMID 23596445, Free PMC Article

See all (6) citations in PubMed

GeneRIFs: Gene References Into Functions

General gene information

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Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in plasma membrane TAS
Traceable Author Statement
more info
 PubMed 

General protein information

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Preferred Names
killer cell lectin-like receptor subfamily A, member 10
Names
natural killer cell receptor

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_008459.2 → NP_032485.2  killer cell lectin-like receptor subfamily A, member 10

    See identical proteins and their annotated locations for NP_032485.2

    Status: VALIDATED

    Source sequence(s)
    AF110492
    Consensus CDS
    CCDS20600.1
    UniProtKB/TrEMBL
    C7SF18, Q9R1G6
    Related
    ENSMUSP00000107651.2, ENSMUST00000112020.2
    Conserved Domains (2) summary
    cd03593
    Location:145 → 257
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    pfam08391
    Location:40 → 157
    Ly49; Ly49-like protein, N-terminal region

RefSeqs of Annotated Genomes: GCF_000001635.27-RS_2024_02

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    130243330..130260698 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_036165886.1 → XP_036021779.1  killer cell lectin-like receptor subfamily A, member 10 isoform X1

    Conserved Domains (2) summary
    cd03593
    Location:145 → 259
    CLECT_NK_receptors_like; C-type lectin-like domain (CTLD) of the type found in natural killer cell receptors (NKRs)
    pfam08391
    Location:40 → 157
    Ly49; Ly49-like protein, N-terminal region
Nucleotide Protein Strain
Heading Accession and Version

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