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PTSG_11661 hypothetical protein [ Salpingoeca rosetta ]

Gene ID: 16079012, updated on 14-Dec-2023

Summary

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Gene symbol
PTSG_11661
Gene description
hypothetical protein
Locus tag
PTSG_11661
Gene type
protein coding
RNA name
uncharacterized protein
RefSeq status
PROVISIONAL
Organism
Salpingoeca rosetta (strain: ATCC 50818, culture-collection: ATCC:50818)
Lineage
Eukaryota; Choanoflagellida; Craspedida; Salpingoecidae; Salpingoeca
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Genomic context

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Location:
chromosome: Unknown
Exon count:
27

NW_004754932.1Genomic Context describing neighboring genes Neighboring gene cytochrome b5 domain-containing protein 1 Neighboring gene hypothetical protein Neighboring gene polyadenylate binding protein Neighboring gene hypothetical protein Neighboring gene tyrosine-protein phosphatase corkscrew

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_004754932.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA ligase (ATP) activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables aspartic-type endopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA recombination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in lagging strand elongation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
hypothetical protein

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NW_004754932.1 Reference assembly

    Range
    1725208..1735987
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004998361.1 → XP_004998418.1  uncharacterized protein PTSG_11661 [Salpingoeca rosetta]

    See identical proteins and their annotated locations for XP_004998418.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    F2TXY4
    Conserved Domains (6) summary
    cd07969
    Location:1239 → 1386
    OBF_DNA_ligase_I; The Oligonucleotide/oligosaccharide binding (OB)-fold domain of ATP-dependent DNA ligase I is a DNA-binding module that is part of the catalytic core unit
    cd07900
    Location:972 → 1234
    Adenylation_DNA_ligase_I_Euk; Adenylation domain of eukaryotic DNA Ligase I
    PLN03113
    Location:585 → 1388
    PLN03113; DNA ligase 1; Provisional
    pfam04675
    Location:733 → 907
    DNA_ligase_A_N; DNA ligase N terminus
    pfam07522
    Location:237 → 362
    DRMBL; DNA repair metallo-beta-lactamase
    cd16273
    Location:6 → 154
    SNM1A-1C-like_MBL-fold; SNM1A , artemis/SNM1C, yeast Pso2p, and related proteins; MBL-fold metallo-hydrolase domain
Protein Accession Links
GenPept Link UniProtKB Link
EGD76243.1

Gene LinkOut

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Molecular Biology Databases