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CXorf38 chromosome X open reading frame 38 [ Homo sapiens (human) ]

Gene ID: 159013, updated on 1-Jun-2020

Summary

Official Symbol
CXorf38provided by HGNC
Official Full Name
chromosome X open reading frame 38provided by HGNC
Primary source
HGNC:HGNC:28589
See related
Ensembl:ENSG00000185753
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Ubiquitous expression in lymph node (RPKM 5.9), thyroid (RPKM 5.2) and 25 other tissues See more
Orthologs

Genomic context

See CXorf38 in Genome Data Viewer
Location:
Xp11.4
Exon count:
7
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) X NC_000023.11 (40626921..40647678, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (40486173..40506929, complement)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene ATPase H+ transporting accessory protein 2 Neighboring gene mitochondrial pyruvate carrier 1 like Neighboring gene mediator complex subunit 14 Neighboring gene MED14 opposite strand Neighboring gene divergent-paired related homeobox pseudogene 6

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • MGC39350

General protein information

Preferred Names
uncharacterized protein CXorf38

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016376.1 RefSeqGene

    Range
    5007..25647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_001330455.2NP_001317384.1  uncharacterized protein CXorf38 isoform 2

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses alternate splice sites in its UTRs, and uses a downstream in-frame start codon, compared to variant 1. The encoded isoform (2) has a shorter N-terminus than isoform 1.
    Source sequence(s)
    AC092473, AC093029
    Consensus CDS
    CCDS83467.1
    UniProtKB/Swiss-Prot
    Q8TB03
  2. NM_144970.3NP_659407.1  uncharacterized protein CXorf38 isoform 1

    See identical proteins and their annotated locations for NP_659407.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longer transcript and encodes the longer isoform (1).
    Source sequence(s)
    AC092473, BC025334, BM969708, CV572553, DB207233
    Consensus CDS
    CCDS14253.1
    UniProtKB/Swiss-Prot
    Q8TB03
    Related
    ENSP00000330488.5, ENST00000327877.10
    Conserved Domains (1) summary
    pfam15112
    Location:9310
    DUF4559; Domain of unknown function (DUF4559)

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p13 Primary Assembly

    Range
    40626921..40647678 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_017029302.1XP_016884791.1  uncharacterized protein CXorf38 isoform X2

  2. XM_006724527.4XP_006724590.2  uncharacterized protein CXorf38 isoform X4

    Conserved Domains (1) summary
    pfam15112
    Location:9250
    DUF4559; Domain of unknown function (DUF4559)
  3. XM_005272589.3XP_005272646.2  uncharacterized protein CXorf38 isoform X1

    See identical proteins and their annotated locations for XP_005272646.2

    UniProtKB/Swiss-Prot
    Q8TB03
    Conserved Domains (1) summary
    pfam15112
    Location:9310
    DUF4559; Domain of unknown function (DUF4559)
  4. XM_017029303.1XP_016884792.1  uncharacterized protein CXorf38 isoform X3

    Conserved Domains (1) summary
    pfam15112
    Location:9265
    DUF4559; Domain of unknown function (DUF4559)
  5. XM_006724528.2XP_006724591.1  uncharacterized protein CXorf38 isoform X3

    Conserved Domains (1) summary
    pfam15112
    Location:9265
    DUF4559; Domain of unknown function (DUF4559)
  6. XM_017029304.1XP_016884793.1  uncharacterized protein CXorf38 isoform X5

    UniProtKB/Swiss-Prot
    Q8TB03
    Related
    ENSP00000367677.1, ENST00000378421.1
    Conserved Domains (1) summary
    pfam15112
    Location:1191
    DUF4559; Domain of unknown function (DUF4559)
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