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FMR1NB FMR1 neighbor [ Homo sapiens (human) ]

Gene ID: 158521, updated on 22-Sep-2022

Summary

Official Symbol
FMR1NBprovided by HGNC
Official Full Name
FMR1 neighborprovided by HGNC
Primary source
HGNC:HGNC:26372
See related
Ensembl:ENSG00000176988 AllianceGenome:HGNC:26372
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CT37; NYSAR35; NY-SAR-35
Summary
Predicted to be integral component of membrane. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 27.9) See more
Orthologs
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Genomic context

See FMR1NB in Genome Data Viewer
Location:
Xq27.3-q28
Exon count:
6
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) X NC_000023.11 (147981337..148026665)
110 current T2T-CHM13v2.0 (GCF_009914755.1) X NC_060947.1 (146246086..146292191)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) X NC_000023.10 (147062857..147108185)

Chromosome X - NC_000023.11Genomic Context describing neighboring genes Neighboring gene origin of replication in 5' region of FMR1 Neighboring gene FMR1 antisense RNA 1 Neighboring gene fragile site, folic acid type, rare, fra(X)(q27.3) A Neighboring gene fragile X messenger ribonucleoprotein 1 Neighboring gene RNA, 5S ribosomal pseudogene 524 Neighboring gene ferritin heavy chain 1 pseudogene 8 Neighboring gene HAX1 pseudogene 1

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ25736

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 

General protein information

Preferred Names
FMR1 neighbor protein
Names
cancer/testis antigen 37
sarcoma antigen NY-SAR-35

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

Genomic

  1. NG_016349.2 RefSeqGene

    Range
    5009..50337
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. NM_152578.3NP_689791.1  FMR1 neighbor protein

    See identical proteins and their annotated locations for NP_689791.1

    Status: VALIDATED

    Source sequence(s)
    AK098602, BC034320
    Consensus CDS
    CCDS14683.1
    UniProtKB/Swiss-Prot
    D3DWT3, Q8N0W7
    Related
    ENSP00000359498.3, ENST00000370467.8

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000023.11 Reference GRCh38.p14 Primary Assembly

    Range
    147981337..148026665
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060947.1 Alternate T2T-CHM13v2.0

    Range
    146246086..146292191
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)