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LINC01600 long intergenic non-protein coding RNA 1600 [ Homo sapiens (human) ]

Gene ID: 154386, updated on 12-Oct-2019

Summary

Official Symbol
LINC01600provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1600provided by HGNC
Primary source
HGNC:HGNC:21600
See related
Ensembl:ENSG00000164385
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C6orf195; bA145H9.2
Expression
Low expression observed in reference dataset See more
Orthologs

Genomic context

See LINC01600 in Genome Data Viewer
Location:
6p25.2
Exon count:
3
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 6 NC_000006.12 (2621913..2634603, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 6 NC_000006.11 (2622972..2635298, complement)

Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene GDP-mannose 4,6-dehydratase Neighboring gene uncharacterized LOC107986512 Neighboring gene GMDS divergent transcript Neighboring gene high mobility group nucleosomal binding domain 2 pseudogene 28 Neighboring gene long intergenic non-protein coding RNA 2521 Neighboring gene Sharpr-MPRA regulatory region 3200 Neighboring gene Sharpr-MPRA regulatory region 3960 Neighboring gene myosin light chain kinase family member 4

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Clone Names

  • FLJ31934, MGC120321, MGC120322, MGC120323

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_131168.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK056496, AL138876, BC104007
    Related
    ENST00000624527.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20190905

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000006.12 Reference GRCh38.p13 Primary Assembly

    Range
    2621913..2634603 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_152554.2: Suppressed sequence

    Description
    NM_152554.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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