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Hoxc4 homeobox C4 [ Mus musculus (house mouse) ]

Gene ID: 15423, updated on 21-Oct-2021

Summary

Official Symbol
Hoxc4provided by MGI
Official Full Name
homeobox C4provided by MGI
Primary source
MGI:MGI:96195
See related
Ensembl:ENSMUSG00000075394
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
Hox-3.5
Expression
Broad expression in CNS E11.5 (RPKM 2.2), ovary adult (RPKM 1.9) and 16 other tissues See more
Orthologs
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Genomic context

See Hoxc4 in Genome Data Viewer
Location:
15 F3; 15 58.08 cM
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 15 NC_000081.7 (102926531..102945281)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 15 NC_000081.6 (103018097..103036856)
Build 37.2 previous assembly MGSCv37 (GCF_000001635.18) 15 NC_000081.5 (102864826..102867283)

Chromosome 15 - NC_000081.7Genomic Context describing neighboring genes Neighboring gene homeobox C6 Neighboring gene microRNA 615 Neighboring gene homeobox C5 Neighboring gene predicted gene, 30528 Neighboring gene predicted gene 28876 Neighboring gene Riken cDNA D930007P13 gene

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by MGI

Component Evidence Code Pubs
located_in nucleoplasm ISO
Inferred from Sequence Orthology
more info
 
located_in nucleoplasm TAS
Traceable Author Statement
more info
 
is_active_in nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
homeobox protein Hox-C4
Names
homeo box C4
homeobox protein Hox-3.5

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_013553.2NP_038581.2  homeobox protein Hox-C4

    See identical proteins and their annotated locations for NP_038581.2

    Status: VALIDATED

    Source sequence(s)
    AC021667, AC124345
    Consensus CDS
    CCDS27897.1
    UniProtKB/Swiss-Prot
    Q08624
    Related
    ENSMUSP00000097740.4, ENSMUST00000100164.5
    Conserved Domains (1) summary
    pfam00046
    Location:159213
    Homeobox; Homeobox domain

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000081.7 Reference GRCm39 C57BL/6J

    Range
    102926531..102945281
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_006520461.4XP_006520524.1  homeobox protein Hox-C4 isoform X1

    See identical proteins and their annotated locations for XP_006520524.1

    UniProtKB/Swiss-Prot
    Q08624
    Conserved Domains (1) summary
    pfam00046
    Location:159213
    Homeobox; Homeobox domain
  2. XM_006520463.4XP_006520526.1  homeobox protein Hox-C4 isoform X1

    See identical proteins and their annotated locations for XP_006520526.1

    UniProtKB/Swiss-Prot
    Q08624
    Conserved Domains (1) summary
    pfam00046
    Location:159213
    Homeobox; Homeobox domain
  3. XM_011245460.4XP_011243762.1  homeobox protein Hox-C4 isoform X1

    See identical proteins and their annotated locations for XP_011243762.1

    UniProtKB/Swiss-Prot
    Q08624
    Conserved Domains (1) summary
    pfam00046
    Location:159213
    Homeobox; Homeobox domain
  4. XM_006520462.5XP_006520525.1  homeobox protein Hox-C4 isoform X1

    See identical proteins and their annotated locations for XP_006520525.1

    UniProtKB/Swiss-Prot
    Q08624
    Conserved Domains (1) summary
    pfam00046
    Location:159213
    Homeobox; Homeobox domain
  5. XM_030248340.2XP_030104200.1  homeobox protein Hox-C4 isoform X2

    Conserved Domains (1) summary
    pfam00046
    Location:1468
    Homeobox; Homeobox domain
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