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PLAC8L1 PLAC8 like 1 [ Homo sapiens (human) ]

Gene ID: 153770, updated on 11-Sep-2019

Summary

Official Symbol
PLAC8L1provided by HGNC
Official Full Name
PLAC8 like 1provided by HGNC
Primary source
HGNC:HGNC:31746
See related
Ensembl:ENSG00000173261
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Biased expression in testis (RPKM 3.1) and skin (RPKM 0.3) See more
Orthologs

Genomic context

See PLAC8L1 in Genome Data Viewer
Location:
5q32
Exon count:
5
Annotation release Status Assembly Chr Location
109.20190905 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (146084149..146105577, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (145463876..145483946, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986458 Neighboring gene SH3 domain containing ring finger 2 Neighboring gene apolipoprotein O like pseudogene Neighboring gene uncharacterized LOC107986459 Neighboring gene leucyl-tRNA synthetase 1 Neighboring gene ribosomal protein L35a pseudogene 16 Neighboring gene ribosomal protein L35a pseudogene 17

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001029869.3NP_001025040.1  PLAC8-like protein 1

    See identical proteins and their annotated locations for NP_001025040.1

    Status: VALIDATED

    Source sequence(s)
    AC091887, BG198388
    Consensus CDS
    CCDS34264.1
    UniProtKB/Swiss-Prot
    A1L4L8
    Related
    ENSP00000309087.4, ENST00000311450.9
    Conserved Domains (1) summary
    TIGR01571
    Location:70158
    A_thal_Cys_rich; uncharacterized Cys-rich domain

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    146084149..146105577 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_005268381.3XP_005268438.1  PLAC8-like protein 1 isoform X1

    Conserved Domains (1) summary
    TIGR01571
    Location:50138
    A_thal_Cys_rich; uncharacterized Cys-rich domain
  2. XM_011537571.2XP_011535873.1  PLAC8-like protein 1 isoform X2

    Conserved Domains (1) summary
    TIGR01571
    Location:43131
    A_thal_Cys_rich; uncharacterized Cys-rich domain
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