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GARIN3 golgi associated RAB2B interactor family member 3 [ Homo sapiens (human) ]

Gene ID: 153745, updated on 29-Oct-2022

Summary

Official Symbol
GARIN3provided by HGNC
Official Full Name
golgi associated RAB2B interactor family member 3provided by HGNC
Primary source
HGNC:HGNC:28397
See related
Ensembl:ENSG00000170613 MIM:619883; AllianceGenome:HGNC:28397
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
FAM71B; GARI-L3
Summary
Located in nucleus. [provided by Alliance of Genome Resources, Apr 2022]
Expression
Restricted expression toward testis (RPKM 18.4) See more
Orthologs
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Genomic context

See GARIN3 in Genome Data Viewer
Location:
5q33.3
Exon count:
2
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (157161846..157166264, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (157680788..157685206, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (156588857..156593275, complement)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene hepatitis A virus cellular receptor 2 Neighboring gene mediator complex subunit 7 Neighboring gene IL2 inducible T cell kinase Neighboring gene cytoplasmic FMR1 interacting protein 2 Neighboring gene fibronectin type III domain containing 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Homology

Clone Names

  • MGC26988

Gene Ontology Provided by GOA

Component Evidence Code Pubs
located_in Cajal body IEA
Inferred from Electronic Annotation
more info
 
located_in Golgi apparatus ISS
Inferred from Sequence or Structural Similarity
more info
 
located_in nucleus HDA PubMed 

General protein information

Preferred Names
Golgi-associated RAB2 interactor protein 3
Names
Golgi associated RAB2 interactor protein 3
family with sequence similarity 71 member B
protein FAM71B
testicular tissue protein Li 68

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_130899.3NP_570969.2  Golgi-associated RAB2 interactor protein 3

    See identical proteins and their annotated locations for NP_570969.2

    Status: VALIDATED

    Source sequence(s)
    AC010609, BC025409
    Consensus CDS
    CCDS4335.1
    UniProtKB/Swiss-Prot
    Q8TC56, Q96LY8
    UniProtKB/TrEMBL
    A0A140VJJ4
    Related
    ENSP00000305596.4, ENST00000302938.4
    Conserved Domains (2) summary
    pfam12480
    Location:113186
    DUF3699; Protein of unknown function (DUF3699)
    cl01503
    Location:225334
    TrbL; TrbL/VirB6 plasmid conjugal transfer protein

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

    Range
    157161846..157166264 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060929.1 Alternate T2T-CHM13v2.0

    Range
    157680788..157685206 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)