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C5orf38 chromosome 5 open reading frame 38 [ Homo sapiens (human) ]

Gene ID: 153571, updated on 24-Jul-2021

Summary

Official Symbol
C5orf38provided by HGNC
Official Full Name
chromosome 5 open reading frame 38provided by HGNC
Primary source
HGNC:HGNC:24226
See related
MIM:610522
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
CEI; IRX2NB
Expression
Biased expression in lung (RPKM 1.7), fat (RPKM 0.8) and 9 other tissues See more
Orthologs
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Genomic context

See C5orf38 in Genome Data Viewer
Location:
5p15.33
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 5 NC_000005.10 (2751893..2758578)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (2752007..2758692)

Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107986398 Neighboring gene long stress-induced non-coding transcript 5 Neighboring gene iroquois homeobox 2 Neighboring gene 3-hydroxyisobutyryl-Coenzyme A hydrolase pseudogene Neighboring gene uncharacterized LOC105374620

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

Associated conditions

Description Tests
Genome-wide association study of selenium concentrations.
GeneReviews: Not available

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Other Names

  • IRX2 neighbor
  • coordinated expression to IRX2
  • coordinated expression to IRXA2 homeobox
  • coordinated expression to IRXA2 protein

Clone Names

  • MGC126657, MGC126683

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Component Evidence Code Pubs
located_in extracellular region IEA
Inferred from Electronic Annotation
more info
 

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_122125.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses two alternate splice sites, compared to variant 1. This variant is represented as non-coding because use of the 5'-most expected translation start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC091891, AY249325, BC143640, BX090247
  2. NR_122126.2 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (4) uses an alternate splice site, compared to variant 1. This variant is represented as non-coding because use of the 5'-most expected translation start codon, as used in variant 1, renders the transcript a candidate for nonsense-mediated mRNA decay (NMD).
    Source sequence(s)
    AC091891, AY249325, BC143638, BX090247

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000005.10 Reference GRCh38.p13 Primary Assembly

    Range
    2751893..2758578
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_001294337.2: Suppressed sequence

    Description
    NM_001294337.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  2. NM_001306149.2: Suppressed sequence

    Description
    NM_001306149.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  3. NM_001306150.2: Suppressed sequence

    Description
    NM_001306150.2: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  4. NM_001365685.1: Suppressed sequence

    Description
    NM_001365685.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  5. NM_001365688.1: Suppressed sequence

    Description
    NM_001365688.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  6. NM_001365689.1: Suppressed sequence

    Description
    NM_001365689.1: This RefSeq was removed because it is now thought that this gene does not encode a protein.
  7. NM_178569.4: Suppressed sequence

    Description
    NM_178569.4: This RefSeq was removed because it is now thought that this gene does not encode a protein.
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