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LINC01085 long intergenic non-protein coding RNA 1085 [ Homo sapiens (human) ]

Gene ID: 152742, updated on 17-Sep-2024

Summary

Official Symbol
LINC01085provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1085provided by HGNC
Primary source
HGNC:HGNC:27198
See related
Ensembl:ENSG00000250634 AllianceGenome:HGNC:27198
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

See LINC01085 in Genome Data Viewer
Location:
4p15.33
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (14111968..14140052)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (14091655..14119752)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (14113592..14141676)

Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 1182 Neighboring gene uncharacterized LOC101929048 Neighboring gene uncharacterized LOC107986182 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:13893421-13894620 Neighboring gene P300/CBP strongly-dependent group 1 enhancer GRCh37_chr4:13906696-13907895 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:13908590-13909789 Neighboring gene C9orf78 pseudogene 2 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21329 Neighboring gene uncharacterized LOC124900670 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14171749-14172320 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:14173379-14174044 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr4:14177103-14177745 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14174045-14174710 Neighboring gene Sharpr-MPRA regulatory region 1402 Neighboring gene Sharpr-MPRA regulatory region 15154 Neighboring gene Kruppel like factor 17 pseudogene 2 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14228109-14228913 Neighboring gene VISTA enhancer hs842 Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr4:14337797-14338996 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14366397-14366955 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:14404596-14405242 Neighboring gene NANOG hESC enhancer GRCh37_chr4:14412074-14412623 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14479536-14480036 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:14480037-14480537 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:14482730-14483287 Neighboring gene long intergenic non-protein coding RNA 504 Neighboring gene MT-ND2 pseudogene 31

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_033931.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AC073848, AI031657, AI472966, AK055518, AK311310, DB481652
    Related
    ENST00000715508.1

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

    Range
    14111968..14140052
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060928.1 Alternate T2T-CHM13v2.0

    Range
    14091655..14119752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)