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LINC00471 long intergenic non-protein coding RNA 471 [ Homo sapiens (human) ]

Gene ID: 151477, updated on 14-Dec-2021

Summary

Official Symbol
LINC00471provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 471provided by HGNC
Primary source
HGNC:HGNC:28668
See related
Ensembl:ENSG00000181798
Gene type
ncRNA
RefSeq status
PREDICTED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C2orf52
Expression
Broad expression in testis (RPKM 1.3), thyroid (RPKM 0.4) and 20 other tissues See more
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Genomic context

See LINC00471 in Genome Data Viewer
Location:
2q37.1
Exon count:
3
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 2 NC_000002.12 (231508426..231514339, complement)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (232373137..232379050, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC107985998 Neighboring gene RNA, U2 small nuclear 22, pseudogene Neighboring gene neuromedin U receptor 1 Neighboring gene uncharacterized LOC105376787 Neighboring gene Sharpr-MPRA regulatory region 7070

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genome-wide meta-analysis identifies 11 new loci for anthropometric traits and provides insights into genetic architecture.
EBI GWAS Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_024079.1 RNA Sequence

    Status: PREDICTED

    Source sequence(s)
    BC033054
    Related
    ENST00000668648.2

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p13 Primary Assembly

    Range
    231508426..231514339 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_173513.2: Suppressed sequence

    Description
    NM_173513.2: This RefSeq was permanently suppressed because it is now thought that this gene does not encode a protein.
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