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LINC01931 long intergenic non-protein coding RNA 1931 [ Homo sapiens (human) ]

Gene ID: 150596, updated on 17-Sep-2024

Summary

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Official Symbol
LINC01931provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1931provided by HGNC
Primary source
HGNC:HGNC:52743
See related
Ensembl:ENSG00000162947 AllianceGenome:HGNC:52743
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Low expression observed in reference dataset See more
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Genomic context

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See LINC01931 in Genome Data Viewer
Location:
2q23.3
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2024_08 current GRCh38.p14 (GCF_000001405.40) 2 NC_000002.12 (149767506..149859191, complement)
RS_2024_08 current T2T-CHM13v2.0 (GCF_009914755.1) 2 NC_060926.1 (150217944..150309301, complement)
RS_2024_09 previous assembly GRCh37.p13 (GCF_000001405.25) 2 NC_000002.11 (150624020..150715705, complement)

Chromosome 2 - NC_000002.12Genomic Context describing neighboring genes Neighboring gene MMADHC divergent transcript Neighboring gene RNA, U6 small nuclear 601, pseudogene Neighboring gene uncharacterized LOC105373680 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr2:150734031-150735230 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr2:150755802-150756393 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150818658-150819158 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150819159-150819659 Neighboring gene H3K27ac hESC enhancer GRCh37_chr2:150891977-150892477 Neighboring gene MPRA-validated peak3898 silencer Neighboring gene ReSE screen-validated silencer GRCh37_chr2:150973602-150973830 Neighboring gene uncharacterized LOC105373682 Neighboring gene long intergenic non-protein coding RNA 1818 Neighboring gene long intergenic non-protein coding RNA 1817

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: HPA RNA-seq normal tissues HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

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Related articles in PubMed

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. Ota T, et al. Nat Genet, 2004 Jan. PMID 14702039

GeneRIFs: Gene References Into Functions

Phenotypes

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Review eQTL and phenotype association data in this region using PheGenI

Variation

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See variants in ClinVar

See studies and variants in dbVar

See Variation Viewer (GRCh37.p13)

Genotypes

General gene information

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Markers

Clone Names

  • FLJ32955, AC007364.1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_145421.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AK057517
    Related
    ENST00000295052.3

RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2024_08

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000002.12 Reference GRCh38.p14 Primary Assembly

    Range
    149767506..149859191 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060926.1 Alternate T2T-CHM13v2.0

    Range
    150217944..150309301 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_153041.1: Suppressed sequence

    Description
    NM_153041.1: This RefSeq was permanently suppressed because currently there is insufficient support for the transcript and the protein.
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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