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APCDD1L-DT APCDD1L divergent transcript [ Homo sapiens (human) ]

Gene ID: 149773, updated on 13-May-2022

Summary

Official Symbol
APCDD1L-DTprovided by HGNC
Official Full Name
APCDD1L divergent transcriptprovided by HGNC
Primary source
HGNC:HGNC:27152
See related
Ensembl:ENSG00000231290 AllianceGenome:HGNC:27152
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
APCDD1L-AS1
Expression
Biased expression in salivary gland (RPKM 1.4), kidney (RPKM 1.2) and 3 other tissues See more
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Genomic context

See APCDD1L-DT in Genome Data Viewer
Location:
20q13.32
Exon count:
7
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 20 NC_000020.11 (58515379..58619892)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 20 NC_060944.1 (60296432..60401926)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 20 NC_000020.10 (57090435..57194948)

Chromosome 20 - NC_000020.11Genomic Context describing neighboring genes Neighboring gene RAB22A, member RAS oncogene family Neighboring gene VAMP associated protein B and C Neighboring gene APC down-regulated 1 like Neighboring gene Sharpr-MPRA regulatory region 4326 Neighboring gene long intergenic non-protein coding RNA 1711

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

Phenotypes

EBI GWAS Catalog

Description
Discovery of genetic biomarkers contributing to variation in drug response of cytidine analogues using human lymphoblastoid cell lines.
EBI GWAS Catalog
Longitudinal genome-wide association of cardiovascular disease risk factors in the Bogalusa heart study.
EBI GWAS Catalog

General gene information

Markers

Other Names

  • APCDD1L antisense RNA 1 (head to head)
  • APCDD1L antisense RNA 1 (non-protein coding)

Clone Names

  • FLJ33293, FLJ34385

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_034147.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AI077602, AK054637, AL118513
    Related
    ENST00000427140.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000020.11 Reference GRCh38.p14 Primary Assembly

    Range
    58515379..58619892
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060944.1 Alternate T2T-CHM13v2.0

    Range
    60296432..60401926
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)