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SPATA45 spermatogenesis associated 45 [ Homo sapiens (human) ]

Gene ID: 149643, updated on 13-May-2022

Summary

Official Symbol
SPATA45provided by HGNC
Official Full Name
spermatogenesis associated 45provided by HGNC
Primary source
HGNC:HGNC:33709
See related
Ensembl:ENSG00000185523 AllianceGenome:HGNC:33709
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C1orf227
Expression
Biased expression in testis (RPKM 2.4), lymph node (RPKM 0.2) and 3 other tissues See more
Orthologs
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Genomic context

See SPATA45 in Genome Data Viewer
Location:
1q32.3
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (212830141..212847649, complement)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (212075115..212092629, complement)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (213003483..213020991, complement)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene TatD DNase domain containing 3 Neighboring gene RPS5 pseudogene 4 Neighboring gene FLVCR1 divergent transcript Neighboring gene ribosomal protein S28 pseudogene 2

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Homology

General protein information

Preferred Names
spermatogenesis-associated protein 45
Names
UPF0732 protein C1orf227

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001024601.3NP_001019772.1  spermatogenesis-associated protein 45

    See identical proteins and their annotated locations for NP_001019772.1

    Status: VALIDATED

    Source sequence(s)
    BC035742
    Consensus CDS
    CCDS31020.1
    UniProtKB/Swiss-Prot
    Q537H7
    Related
    ENSP00000419160.1, ENST00000332912.3

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    212830141..212847649 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    212075115..212092629 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)