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LINC01341 long intergenic non-protein coding RNA 1341 [ Homo sapiens (human) ]

Gene ID: 149134, updated on 13-Mar-2020

Summary

Official Symbol
LINC01341provided by HGNC
Official Full Name
long intergenic non-protein coding RNA 1341provided by HGNC
Primary source
HGNC:HGNC:49457
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Broad expression in ovary (RPKM 1.2), testis (RPKM 1.0) and 21 other tissues See more

Genomic context

See LINC01341 in Genome Data Viewer
Location:
1q44
Exon count:
2
Annotation release Status Assembly Chr Location
109.20200228 current GRCh38.p13 (GCF_000001405.39) 1 NC_000001.11 (246789617..246791486)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (246952919..246954788)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene saccharopine dehydrogenase (putative) Neighboring gene uncharacterized LOC107985373 Neighboring gene kinesin family member 28, pseudogene Neighboring gene AT-hook containing transcription factor 1 Neighboring gene ZNF670-ZNF695 readthrough (NMD candidate) Neighboring gene zinc finger protein 695 Neighboring gene Sharpr-MPRA regulatory region 11618

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Clone Names

  • MGC120210, MGC120211, MGC120212, MGC120213

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_015422.1 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AL591848

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p13 Primary Assembly

    Range
    246789617..246791486
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Suppressed Reference Sequence(s)

The following Reference Sequences have been suppressed. Explain

  1. NM_207326.1: Suppressed sequence

    Description
    NM_207326.1: This RefSeq was permanently suppressed because currently there is support for the transcript but not for the protein.
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