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Gt(ROSA)26Sor gene trap ROSA 26, Philippe Soriano [ Mus musculus (house mouse) ]

Gene ID: 14910, updated on 31-Jan-2023

Summary

Official Symbol
Gt(ROSA)26Sorprovided by MGI
Official Full Name
gene trap ROSA 26, Philippe Sorianoprovided by MGI
Primary source
MGI:MGI:104735
See related
Ensembl:ENSMUSG00000086429 AllianceGenome:MGI:104735
Gene type
ncRNA
RefSeq status
VALIDATED
Organism
Mus musculus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus
Also known as
R26; ROSA26; Gtrgeo26; Gtrosa26; Thumpd3as1
Summary
This gene produces a long non-coding RNA (lncRNA) that is under the control of a constitutive promoter. This locus is a widely used site for the integration of transgenes and reporter constructs. [provided by RefSeq, Oct 2015]
Expression
Ubiquitous expression in bladder adult (RPKM 11.4), liver E14 (RPKM 10.6) and 25 other tissues See more
Orthologs
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Genomic context

See Gt(ROSA)26Sor in Genome Data Viewer
Location:
6 E3; 6 52.73 cM
Exon count:
3
Annotation release Status Assembly Chr Location
109 current GRCm39 (GCF_000001635.27) 6 NC_000072.7 (113044389..113054205, complement)
108.20200622 previous assembly GRCm38.p6 (GCF_000001635.26) 6 NC_000072.6 (113067428..113077244, complement)

Chromosome 6 - NC_000072.7Genomic Context describing neighboring genes Neighboring gene predicted gene, 43868 Neighboring gene THUMP domain containing 3 Neighboring gene predicted gene, 22591 Neighboring gene SET domain containing 5 Neighboring gene lipoma HMGIC fusion partner-like protein 4

Genomic regions, transcripts, and products

Expression

  • Project title: Mouse ENCODE transcriptome data
  • Description: RNA profiling data sets generated by the Mouse ENCODE project.
  • BioProject: PRJNA66167
  • Publication: PMID 25409824
  • Analysis date: n/a

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Variation

Alleles

Alleles of this type are documented at Mouse Genome Informatics  (MGI)

General gene information

Markers

Homology

Other Names

  • beta geo

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_027008.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) represents the longest transcript.
    Source sequence(s)
    BQ032740, BY207362, U83174
    Related
    ENSMUST00000124246.5
  2. NR_027009.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) uses an alternate splice site near the 5' end, compared to variant 1.
    Source sequence(s)
    AC155722, BQ032740, BY207362
    Related
    ENSMUST00000159544.4
  3. NR_027010.1 RNA Sequence

    Status: VALIDATED

    Description
    Transcript Variant: This variant (3) uses an alternate 5' and 3' splice pattern, compared to variant 1.
    Source sequence(s)
    AK021028, BY207362, BY727583
    Related
    ENSMUST00000167415.9

RefSeqs of Annotated Genomes: Mus musculus Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCm39 C57BL/6J

Genomic

  1. NC_000072.7 Reference GRCm39 C57BL/6J

    Range
    113044389..113054205 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)