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PTPRVP protein tyrosine phosphatase receptor type V, pseudogene [ Homo sapiens (human) ]

Gene ID: 148713, updated on 13-May-2022

Summary

Official Symbol
PTPRVPprovided by HGNC
Official Full Name
protein tyrosine phosphatase receptor type V, pseudogeneprovided by HGNC
Primary source
HGNC:HGNC:13421
See related
Ensembl:ENSG00000243323 AllianceGenome:HGNC:13421
Gene type
pseudo
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
ESP; PTPRV; OST-PTP
Expression
Biased expression in testis (RPKM 1.9), duodenum (RPKM 0.2) and 7 other tissues See more
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Genomic context

See PTPRVP in Genome Data Viewer
Location:
1q32.1
Exon count:
22
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 1 NC_000001.11 (202168051..202189449)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 1 NC_060925.1 (201425621..201447021)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (202137179..202158577)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene G protein-coupled receptor 37 like 1 Neighboring gene ADP ribosylation factor like GTPase 8A Neighboring gene protein tyrosine phosphatase non-receptor type 7 Neighboring gene small nucleolar RNA U13 Neighboring gene leucine rich repeat containing G protein-coupled receptor 6 Neighboring gene Sharpr-MPRA regulatory region 5820

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Phenotypes

EBI GWAS Catalog

Description
Genomic predictors of combat stress vulnerability and resilience in U.S. Marines: A genome-wide association study across multiple ancestries implicates PRTFDC1 as a potential PTSD gene.
EBI GWAS Catalog

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

RNA

  1. NR_002930.2 RNA Sequence

    Status: VALIDATED

    Source sequence(s)
    AJ629456, AL356953, AY819761
    Related
    ENST00000482597.5

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p14 Primary Assembly

    Range
    202168051..202189449
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060925.1 Alternate T2T-CHM13v2.0

    Range
    201425621..201447021
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)