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PHF13 PHD finger protein 13 [ Homo sapiens (human) ]

Gene ID: 148479, updated on 7-Dec-2018

Summary

Official Symbol
PHF13provided by HGNC
Official Full Name
PHD finger protein 13provided by HGNC
Primary source
HGNC:HGNC:22983
See related
Ensembl:ENSG00000116273
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PHF5; SPOC1
Expression
Broad expression in testis (RPKM 26.3), endometrium (RPKM 8.4) and 25 other tissues See more
Orthologs

Genomic context

See PHF13 in Genome Data Viewer
Location:
1p36.31
Exon count:
5
Annotation release Status Assembly Chr Location
109 current GRCh38.p12 (GCF_000001405.38) 1 NC_000001.11 (6613696..6624033)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 1 NC_000001.10 (6673756..6684093)

Chromosome 1 - NC_000001.11Genomic Context describing neighboring genes Neighboring gene kelch like family member 21 Neighboring gene uncharacterized LOC107984913 Neighboring gene THAP domain containing 3 Neighboring gene DnaJ heat shock protein family (Hsp40) member C11 Neighboring gene long intergenic non-protein coding RNA 1672

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Jun 15 11:32:44 2016

Bibliography

GeneRIFs: Gene References Into FunctionsWhat's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC43399

Gene Ontology Provided by GOA

Function Evidence Code Pubs
chromatin binding IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
chromatin binding IDA
Inferred from Direct Assay
more info
PubMed 
metal ion binding IEA
Inferred from Electronic Annotation
more info
 
methylated histone binding NAS
Non-traceable Author Statement
more info
PubMed 
Process Evidence Code Pubs
cell division IEA
Inferred from Electronic Annotation
more info
 
chromatin organization IEA
Inferred from Electronic Annotation
more info
 
chromosome segregation IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitotic cell cycle IMP
Inferred from Mutant Phenotype
more info
PubMed 
mitotic chromosome condensation IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
mitotic chromosome condensation IMP
Inferred from Mutant Phenotype
more info
PubMed 
Component Evidence Code Pubs
nucleoplasm IEA
Inferred from Electronic Annotation
more info
 
nucleus IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
nucleus IDA
Inferred from Direct Assay
more info
PubMed 

General protein information

Preferred Names
PHD finger protein 13
Names
PHD zinc finger protein PHF5
survival time-associated PHD finger protein in ovarian cancer 1
survival time-associated PHD protein in ovarian cancer

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_153812.3NP_722519.2  PHD finger protein 13

    See identical proteins and their annotated locations for NP_722519.2

    Status: VALIDATED

    Source sequence(s)
    AK097715, AY069975, DB064673
    Consensus CDS
    CCDS85.1
    UniProtKB/Swiss-Prot
    Q86YI8
    UniProtKB/TrEMBL
    A0A158RFV6
    Related
    ENSP00000366876.4, ENST00000377648.4
    Conserved Domains (1) summary
    cd15632
    Location:232278
    PHD_PHF13; PHD finger found in PHD finger protein 13 (PHF13)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p12 Primary Assembly

Genomic

  1. NC_000001.11 Reference GRCh38.p12 Primary Assembly

    Range
    6613696..6624033
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011540762.1XP_011539064.1  PHD finger protein 13 isoform X1

    Conserved Domains (1) summary
    cd15632
    Location:241287
    PHD_PHF13; PHD finger found in PHD finger protein 13 (PHF13)
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