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LGALS16 galectin 16 [ Homo sapiens (human) ]

Gene ID: 148003, updated on 11-Jun-2021

Summary

Official Symbol
LGALS16provided by HGNC
Official Full Name
galectin 16provided by HGNC
Primary source
HGNC:HGNC:40039
See related
Ensembl:ENSG00000249861
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward placenta (RPKM 1.7) See more
Orthologs
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Genomic context

See LGALS16 in Genome Data Viewer
Location:
19q13.2
Exon count:
4
Annotation release Status Assembly Chr Location
109.20210514 current GRCh38.p13 (GCF_000001405.39) 19 NC_000019.10 (39655913..39660647)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 19 NC_000019.9 (40146553..40151287)

Chromosome 19 - NC_000019.10Genomic Context describing neighboring genes Neighboring gene galectin 14 pseudogene Neighboring gene ribosomal protein S29 pseudogene 30 Neighboring gene galectin 14 pseudogene Neighboring gene ribosomal protein S29 pseudogene 27

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables lactose binding IDA
Inferred from Direct Assay
more info
PubMed 
Process Evidence Code Pubs
involved_in apoptotic process IEA
Inferred from Electronic Annotation
more info
 
involved_in positive regulation of T cell apoptotic process IDA
Inferred from Direct Assay
more info
PubMed 
Component Evidence Code Pubs
is_active_in cellular_component ND
No biological Data available
more info
 

General protein information

Preferred Names
galectin-16
Names
beta-galactoside-binding lectin
lectin, galactoside-binding, soluble, 16
NP_001177370.2

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001190441.3NP_001177370.2  galectin-16

    See identical proteins and their annotated locations for NP_001177370.2

    Status: VALIDATED

    Source sequence(s)
    BX095861, FJ613352
    Consensus CDS
    CCDS54267.1
    UniProtKB/Swiss-Prot
    A8MUM7
    Related
    ENSP00000375904.2, ENST00000392051.4
    Conserved Domains (1) summary
    smart00908
    Location:11135
    Gal-bind_lectin; Galactoside-binding lectin

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20210514

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000019.10 Reference GRCh38.p13 Primary Assembly

    Range
    39655913..39660647
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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