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PCYB_113800 bi-functional enzyme: long-chain fatty-acid Co-A ligase and oxalyl Co-A decarboxylase [ Plasmodium cynomolgi strain B ]

Gene ID: 14693729, updated on 5-Sep-2024

Summary

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Gene symbol
PCYB_113800
Gene description
bi-functional enzyme: long-chain fatty-acid Co-A ligase and oxalyl Co-A decarboxylase
Locus tag
PCYB_113800
See related
PlasmoDB:PCYB_113800; VEuPathDB:PCYB_113800
Gene type
protein coding
RefSeq status
PROVISIONAL
Organism
Plasmodium cynomolgi strain B (strain: B)
Lineage
Eukaryota; Alveolata; Apicomplexa; Aconoidasida; Haemosporida; Plasmodium; Plasmodium (Plasmodium)
Orthologs
Plasmodium falciparum all
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Genomic context

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Location:
chromosome: 11
Exon count:
2
Sequence:
NC_020404.1 (1263750..1267922)

NC_020404.1Genomic Context describing neighboring genes Neighboring gene hypothetical protein Neighboring gene hypothetical protein Neighboring gene cell division cycle protein 48 homologue Neighboring gene hypothetical protein

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_020404.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Plasmodium cynomolgi genome sequences provide insight into Plasmodium vivax and the monkey malaria clade. Tachibana S, et al. Nat Genet, 2012 Sep. PMID 22863735, Free PMC Article
  2. Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Burge S, et al. Database (Oxford), 2012. PMID 22301074, Free PMC Article
  3. TreeGrafter: phylogenetic tree-based annotation of proteins with Gene Ontology terms and other annotations. Tang H, et al. Bioinformatics, 2019 Feb 1. PMID 30032202, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables medium-chain fatty acid-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables thiamine pyrophosphate binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Names
bi-functional enzyme: long-chain fatty-acid Co-A ligase and oxalyl Co-A decarboxylase
XP_004223307.1
  • putative

NCBI Reference Sequences (RefSeq)

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Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_020404.1 Reference assembly

    Range
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_004223259.1 → XP_004223307.1  bi-functional enzyme: long-chain fatty-acid Co-A ligase and oxalyl Co-A decarboxylase [Plasmodium cynomolgi strain B]

    See identical proteins and their annotated locations for XP_004223307.1

    Status: PROVISIONAL

    UniProtKB/TrEMBL
    K6UXV8
    Conserved Domains (6) summary
    TIGR03254
    Location:599 → 1267
    oxalate_oxc; oxalyl-CoA decarboxylase
    COG0318
    Location:1 → 572
    CaiC; Acyl-CoA synthetase (AMP-forming)/AMP-acid ligase II [Lipid transport and metabolism, Secondary metabolites biosynthesis, transport and catabolism]
    pfam00205
    Location:801 → 903
    TPP_enzyme_M; Thiamine pyrophosphate enzyme, central domain
    pfam02776
    Location:586 → 763
    TPP_enzyme_N; Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
    cl01629
    Location:1091 → 1267
    TPP_enzymes; Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and ...
    cl17068
    Location:188 → 572
    AFD_class_I; Adenylate forming domain, Class I superfamily
Nucleotide Protein
Heading Accession and Version

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