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C17orf50 chromosome 17 open reading frame 50 [ Homo sapiens (human) ]

Gene ID: 146853, updated on 5-Aug-2022

Summary

Official Symbol
C17orf50provided by HGNC
Official Full Name
chromosome 17 open reading frame 50provided by HGNC
Primary source
HGNC:HGNC:29581
See related
Ensembl:ENSG00000270806 AllianceGenome:HGNC:29581
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Expression
Restricted expression toward testis (RPKM 13.1) See more
Orthologs
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Genomic context

See C17orf50 in Genome Data Viewer
Location:
17q12
Exon count:
3
Annotation release Status Assembly Chr Location
110 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (35760887..35765079)
110 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (36708820..36713017)
105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 17 NC_000017.10 (34087906..34092098)

Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene RAS like family 10 member B Neighboring gene growth arrest specific 2 like 2 Neighboring gene matrix metallopeptidase 28 Neighboring gene TATA-box binding protein associated factor 15 Neighboring gene probable ribosome biogenesis protein RLP24 Neighboring gene HEAT repeat containing 9

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Gene Ontology Provided by GOA

Function Evidence Code Pubs
enables protein binding IPI
Inferred from Physical Interaction
more info
PubMed 

General protein information

Preferred Names
uncharacterized protein C17orf50

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_145272.4NP_660315.2  uncharacterized protein C17orf50

    See identical proteins and their annotated locations for NP_660315.2

    Status: VALIDATED

    Source sequence(s)
    AC006237, AI004987, AY557347, DB452451
    Consensus CDS
    CCDS42298.1
    UniProtKB/Swiss-Prot
    Q6Q621, Q8WW18
    Related
    ENSP00000475146.1, ENST00000605587.2
    Conserved Domains (1) summary
    pfam15470
    Location:5172
    DUF4637; Domain of unknown function (DUF4637)

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 110 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p14 Primary Assembly

Genomic

  1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

    Range
    35760887..35765079
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

Alternate T2T-CHM13v2.0

Genomic

  1. NC_060941.1 Alternate T2T-CHM13v2.0

    Range
    36708820..36713017
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)