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GSG1L GSG1 like [ Homo sapiens (human) ]

Gene ID: 146395, updated on 1-Aug-2020

Summary

Official Symbol
GSG1Lprovided by HGNC
Official Full Name
GSG1 likeprovided by HGNC
Primary source
HGNC:HGNC:28283
See related
Ensembl:ENSG00000169181 MIM:617161
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
PRO19651
Expression
Biased expression in brain (RPKM 2.2), heart (RPKM 1.7) and 2 other tissues See more
Orthologs

Genomic context

See GSG1L in Genome Data Viewer
Location:
16p12.1
Exon count:
10
Annotation release Status Assembly Chr Location
109.20200522 current GRCh38.p13 (GCF_000001405.39) 16 NC_000016.10 (27787528..28063714, complement)
105 previous assembly GRCh37.p13 (GCF_000001405.25) 16 NC_000016.9 (27798850..28074830, complement)

Chromosome 16 - NC_000016.10Genomic Context describing neighboring genes Neighboring gene katanin interacting protein Neighboring gene uncharacterized LOC100128079 Neighboring gene uncharacterized LOC105371157 Neighboring gene RNA, U6 small nuclear 159, pseudogene Neighboring gene RNA, U6 small nuclear 1241, pseudogene Neighboring gene TP53RK binding protein pseudogene 2 Neighboring gene exportin 6 Neighboring gene RNY1 pseudogene 10

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Bibliography

GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Phenotypes

NHGRI GWAS Catalog

Description
Novel genetic loci identified for the pathophysiology of childhood obesity in the Hispanic population.
NHGRI GWA Catalog

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • MGC18079

Gene Ontology Provided by GOA

Function Evidence Code Pubs
protein binding IPI
Inferred from Physical Interaction
more info
PubMed 
Process Evidence Code Pubs
regulation of AMPA receptor activity IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
regulation of postsynaptic neurotransmitter receptor internalization IEA
Inferred from Electronic Annotation
more info
 
Component Evidence Code Pubs
Schaffer collateral - CA1 synapse IEA
Inferred from Electronic Annotation
more info
 
glutamatergic synapse IEA
Inferred from Electronic Annotation
more info
 
integral component of postsynaptic density membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 
plasma membrane IBA
Inferred from Biological aspect of Ancestor
more info
PubMed 

General protein information

Preferred Names
germ cell-specific gene 1-like protein
Names
GSG1-like protein
KTSR5831

NCBI Reference Sequences (RefSeq)

RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001109763.2NP_001103233.1  germ cell-specific gene 1-like protein isoform 1 precursor

    See identical proteins and their annotated locations for NP_001103233.1

    Status: VALIDATED

    Source sequence(s)
    AC008732, AC009030, AI418246, AK128775, CV024949, DB306756
    Consensus CDS
    CCDS45450.1
    UniProtKB/Swiss-Prot
    Q6UXU4
    UniProtKB/TrEMBL
    B3KY67
    Related
    ENSP00000394954.2, ENST00000447459.7
    Conserved Domains (2) summary
    pfam07803
    Location:24132
    GSG-1; GSG1-like protein
    cl21598
    Location:102235
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  2. NM_001323900.2NP_001310829.1  germ cell-specific gene 1-like protein isoform 3 precursor

    Status: VALIDATED

    Source sequence(s)
    AC008732, AC009030, AC130449
    Conserved Domains (2) summary
    pfam07803
    Location:24132
    GSG-1; GSG1-like protein
    cl21598
    Location:102235
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
  3. NM_001323901.2NP_001310830.1  germ cell-specific gene 1-like protein isoform 4 precursor

    Status: VALIDATED

    Source sequence(s)
    AC008732, AC009030, AI418246, AK128775, AY358206, BI752847, DB306756
    Consensus CDS
    CCDS81960.1
    UniProtKB/Swiss-Prot
    Q6UXU4
    UniProtKB/TrEMBL
    B3KY67
    Related
    ENSP00000379074.3, ENST00000395724.7
    Conserved Domains (1) summary
    pfam07803
    Location:24132
    GSG-1; GSG1-like protein
  4. NM_144675.2NP_653276.1  germ cell-specific gene 1-like protein isoform 2

    See identical proteins and their annotated locations for NP_653276.1

    Status: VALIDATED

    Source sequence(s)
    AC008732, BC016460, DB306756
    Consensus CDS
    CCDS10631.1
    UniProtKB/Swiss-Prot
    Q6UXU4
    Related
    ENSP00000370282.3, ENST00000380897.7

RefSeqs of Annotated Genomes: Homo sapiens Annotation Release 109.20200522

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000016.10 Reference GRCh38.p13 Primary Assembly

    Range
    27787528..28063714 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_011545751.2XP_011544053.1  germ cell-specific gene 1-like protein isoform X2

    Conserved Domains (1) summary
    pfam07803
    Location:24132
    GSG-1; GSG1-like protein
  2. XM_011545750.2XP_011544052.1  germ cell-specific gene 1-like protein isoform X1

    Conserved Domains (2) summary
    pfam07803
    Location:24132
    GSG-1; GSG1-like protein
    cl21598
    Location:102235
    PMP22_Claudin; PMP-22/EMP/MP20/Claudin family
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