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These reference sequences exist independently of genome builds. Explain
These reference sequences are curated independently of the genome
annotation cycle, so their versions may not match the RefSeq versions in the current
genome build. Identify version mismatches by comparing the version of the RefSeq in
this section to the one reported in Genomic regions,
transcripts, and products above.
mRNA and Protein(s)
-
NM_001284417.2 → NP_001271346.1 lysM and putative peptidoglycan-binding domain-containing protein 4 isoform b
See identical proteins and their annotated locations for NP_001271346.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (2) differs in the 5' UTR, lacks two alternate exons in the coding region, and initiates translation at an alternate upstream start codon, compared to variant 1. The encoded isoform (b) is shorter and has a distinct N-terminus, compared to isoform a. Variants 2 and 3 encode the same isoform (b).
- Source sequence(s)
-
AC022692, AK056718, AK290296, BC084545, KF459559
- Consensus CDS
-
CCDS66877.1
- UniProtKB/Swiss-Prot
- Q5XG99, Q96LY7
- Related
- ENSP00000506747.1, ENST00000684762.1
- Conserved Domains (1) summary
-
- smart00257
Location:80 → 118
- LysM; Lysin motif
-
NM_001284418.2 → NP_001271347.1 lysM and putative peptidoglycan-binding domain-containing protein 4 isoform b
See identical proteins and their annotated locations for NP_001271347.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (3) differs in the 5' UTR, lacks two alternate exons in the coding region, and initiates translation at an alternate upstream start codon, compared to variant 1. The encoded isoform (b) is shorter and has a distinct N-terminus, compared to isoform a. Variants 2 and 3 encode the same isoform (b).
- Source sequence(s)
-
AC022692, BC084545, HY131530, KF459559
- Consensus CDS
-
CCDS66877.1
- UniProtKB/Swiss-Prot
- Q5XG99, Q96LY7
- Related
- ENSP00000386283.1, ENST00000409796.5
- Conserved Domains (1) summary
-
- smart00257
Location:80 → 118
- LysM; Lysin motif
-
NM_001284419.2 → NP_001271348.1 lysM and putative peptidoglycan-binding domain-containing protein 4 isoform c
Status: VALIDATED
- Description
- Transcript Variant: This variant (4) differs in the 5' UTR and uses an alternate in-frame splice site, compared to variant 1. The encoded isoform (c) is shorter than isoform a.
- Source sequence(s)
-
AC022692, AK056718, DA405564, DA594971
- Conserved Domains (1) summary
-
- COG1622
Location:204 → 290
- CyoA; Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion]
-
NM_001284420.1 → NP_001271349.1 lysM and putative peptidoglycan-binding domain-containing protein 4 isoform d
Status: VALIDATED
- Description
- Transcript Variant: This variant (5) differs in the 5' UTR, lacks three alternate exons in the coding region, and initiates translation at an alternate upstream start codon, compared to variant 1. The encoded isoform (d) is shorter and has a distinct N-terminus, compared to isoform a.
- Source sequence(s)
-
AC022692, AK056718, DA594971
- Consensus CDS
-
CCDS73788.1
- UniProtKB/TrEMBL
-
F6SJM1
- Related
- ENSP00000445357.2, ENST00000545021.2
- Conserved Domains (1) summary
-
- COG1622
Location:147 → 233
- CyoA; Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion]
-
NM_001284421.2 → NP_001271350.1 lysM and putative peptidoglycan-binding domain-containing protein 4 isoform e
See identical proteins and their annotated locations for NP_001271350.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (6) differs in the 5' UTR, lacks an alternate exon in the coding region, and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (e) has a shorter N-terminus than isoform a. Variants 6 and 7 encoded the same isoform (e).
- Source sequence(s)
-
AC022692, AK056718, CB989579
- Consensus CDS
-
CCDS66876.1
- UniProtKB/TrEMBL
-
B3KWE4
- Conserved Domains (1) summary
-
- COG1622
Location:82 → 168
- CyoA; Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion]
-
NM_001284422.2 → NP_001271351.1 lysM and putative peptidoglycan-binding domain-containing protein 4 isoform e
See identical proteins and their annotated locations for NP_001271351.1
Status: VALIDATED
- Description
- Transcript Variant: This variant (7) lacks an alternate exon in the coding region and initiates translation at a downstream in-frame start codon, compared to variant 1. The encoded isoform (e) has a shorter N-terminus than isoform a. Variants 6 and 7 encoded the same isoform (e).
- Source sequence(s)
-
AC022692, AK056718, BC041097, DA594971, DB044672
- Consensus CDS
-
CCDS66876.1
- UniProtKB/Swiss-Prot
-
Q5XG99
- UniProtKB/TrEMBL
-
B3KWE4
- Related
- ENSP00000333008.5, ENST00000332728.8
- Conserved Domains (1) summary
-
- COG1622
Location:82 → 168
- CyoA; Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion]
-
NM_152449.4 → NP_689662.2 lysM and putative peptidoglycan-binding domain-containing protein 4 isoform a
See identical proteins and their annotated locations for NP_689662.2
Status: VALIDATED
- Description
- Transcript Variant: This variant (1) represents the longest transcript and encodes the longest isoform (a).
- Source sequence(s)
-
AC022692, AK056718, BC041097, KF459559
- Consensus CDS
-
CCDS10381.1
- UniProtKB/Swiss-Prot
-
Q5XG99
- Related
- ENSP00000342840.2, ENST00000344791.6
- Conserved Domains (1) summary
-
- COG1622
Location:209 → 295
- CyoA; Heme/copper-type cytochrome/quinol oxidase, subunit 2 [Energy production and conversion]