U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TA_RS02555 radical SAM protein [ Thermoplasma acidophilum DSM 1728 ]

Gene ID: 1456096, discontinued on 14-Dec-2023
  • This record was discontinued.

Summary

Go to the top of the page Help
Gene symbol
TA_RS02555
Gene description
radical SAM protein
Locus tag
TA_RS02555
Gene type
protein coding
Organism
Thermoplasma acidophilum DSM 1728 (strain: DSM 1728, type-material: type strain of Thermoplasma acidophilum)
Lineage
Archaea; Candidatus Thermoplasmatota; Thermoplasmata; Thermoplasmatales; Thermoplasmataceae; Thermoplasma
Old locus tag
Ta0491
NEW
Try the new Gene table
Try the new Transcript table

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_002578.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. The genome sequence of the thermoacidophilic scavenger Thermoplasma acidophilum. Ruepp A, et al. Nature, 2000 Sep 28. PMID 11029001
  2. Self-sacrifice in radical S-adenosylmethionine proteins. Booker SJ, et al. Curr Opin Chem Biol, 2007 Oct. PMID 17936058, Free PMC Article
  3. The Radical SAM Superfamily. Frey PA, et al. Crit Rev Biochem Mol Biol, 2008 Jan-Feb. PMID 18307109
  4. Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods. Sofia HJ, et al. Nucleic Acids Res, 2001 Mar 1. PMID 11222759, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

General protein information

Go to the top of the page Help
Preferred Names
radical SAM protein

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002578.1 Reference assembly

    Range
    522029..523618 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_010900918.1 radical SAM protein [Thermoplasma acidophilum]

    See identical proteins and their annotated locations for WP_010900918.1

    Conserved Domains (3) summary
    cd01335
    Location:198 → 392
    Radical_SAM; Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and S-adenosylmethionine (SAM) in close proximity. They are characterized by a conserved CxxxCxxC motif, which coordinates the conserved iron-sulfur cluster. ...
    COG1032
    Location:1 → 485
    YgiQ; Radical SAM superfamily enzyme YgiQ, UPF0313 family [General function prediction only]
    cd02068
    Location:25 → 154
    radical_SAM_B12_BD; B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the ...

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Molecular Biology Databases