U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

rrp4 exosome complex RNA-binding protein Rrp4 [ Saccharolobus solfataricus P2 ]

Gene ID: 1454999, updated on 29-Sep-2023

Summary

Go to the top of the page Help
Gene symbol
rrp4
Gene description
exosome complex RNA-binding protein Rrp4
Locus tag
SSO_RS03670
Gene type
protein coding
Organism
Saccharolobus solfataricus P2 (strain: P2)
Lineage
Archaea; Thermoproteota; Thermoprotei; Sulfolobales; Sulfolobaceae; Saccharolobus
Old locus tag
SSO0736
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Sequence:
NC_002754.1 (626461..627204, complement)

NC_002754.1Genomic Context describing neighboring genes Neighboring gene Brix domain-containing protein Neighboring gene 50S ribosomal protein L37ae Neighboring gene exosome complex protein Rrp42 Neighboring gene exosome complex exonuclease Rrp41 Neighboring gene ribosome assembly factor SBDS Neighboring gene archaeal proteasome endopeptidase complex subunit alpha

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NC_002754.1

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Rrp4 and Csl4 are needed for efficient degradation but not for polyadenylation of synthetic and natural RNA by the archaeal exosome. Evguenieva-Hackenberg E, et al. Biochemistry, 2008 Dec 16. PMID 19053279
  2. The archaeal DnaG protein needs Csl4 for binding to the exosome and enhances its interaction with adenine-rich RNAs. Hou L, et al. RNA Biol, 2013 Mar. PMID 23324612, Free PMC Article

GeneRIFs: Gene References Into Functions

What's a GeneRIF?
  1. Results show that DnaG is the second poly(A)-binding protein besides Rrp4 in the heteromeric, RNA-binding cap of the S. solfataricus exosome.
    Title: The archaeal DnaG protein needs Csl4 for binding to the exosome and enhances its interaction with adenine-rich RNAs.
  2. Strong substrate binding by Rrp4- or Csl4-containing exosomes is more important for phosphorolysis than for tailing of RNA in the catalytically active hexameric ring.
    Title: Rrp4 and Csl4 are needed for efficient degradation but not for polyadenylation of synthetic and natural RNA by the archaeal exosome.
Submit: New GeneRIF Correction

General protein information

Go to the top of the page Help
Preferred Names
exosome complex RNA-binding protein Rrp4

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

Genome Annotation

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference assembly

Genomic

  1. NC_002754.1 Reference assembly

    Range
    626461..627204 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. WP_009991309.1 exosome complex RNA-binding protein Rrp4 [Saccharolobus solfataricus]

    See identical proteins and their annotated locations for WP_009991309.1

    UniProtKB/Swiss-Prot
    Q9UXC4
    UniProtKB/TrEMBL
    A0A0E3GXA3, A0A157SZ15, D0KTE0
    Conserved Domains (1) summary
    PRK04163
    Location:6 → 240
    PRK04163; exosome complex protein Rrp4

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

Research Materials