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FAM216B family with sequence similarity 216 member B [ Homo sapiens (human) ]

Gene ID: 144809, updated on 23-Nov-2021

Summary

Official Symbol
FAM216Bprovided by HGNC
Official Full Name
family with sequence similarity 216 member Bprovided by HGNC
Primary source
HGNC:HGNC:26883
See related
Ensembl:ENSG00000179813
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Homo sapiens
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
Also known as
C13orf30
Expression
Biased expression in lung (RPKM 8.2), heart (RPKM 4.2) and 3 other tissues See more
Orthologs
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Genomic context

See FAM216B in Genome Data Viewer
Location:
13q14.11
Exon count:
4
Annotation release Status Assembly Chr Location
109.20211119 current GRCh38.p13 (GCF_000001405.39) 13 NC_000013.11 (42781584..42791549)
105.20201022 previous assembly GRCh37.p13 (GCF_000001405.25) 13 NC_000013.10 (43355720..43365685)

Chromosome 13 - NC_000013.11Genomic Context describing neighboring genes Neighboring gene long intergenic non-protein coding RNA 2341 Neighboring gene TNF superfamily member 11 Neighboring gene VISTA enhancer hs1393 Neighboring gene uncharacterized LOC107984611 Neighboring gene long intergenic non-protein coding RNA 1050

Genomic regions, transcripts, and products

Expression

  • Project title: HPA RNA-seq normal tissues
  • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
  • BioProject: PRJEB4337
  • Publication: PMID 24309898
  • Analysis date: Wed Apr 4 07:08:55 2018

Interactions

Products Interactant Other Gene Complex Source Pubs Description

General gene information

Markers

Homology

Clone Names

  • FLJ40919, MGC138442

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001318932.2NP_001305861.1  protein FAM216B

    Status: VALIDATED

    Description
    Transcript Variant: This variant (1) is the longer transcript. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK098238, AL138819, CB240730, DB221838
    Consensus CDS
    CCDS9386.1
    UniProtKB/Swiss-Prot
    Q8N7L0
    Related
    ENSP00000319336.1, ENST00000313851.3
    Conserved Domains (1) summary
    pfam15107
    Location:4106
    FAM216B; FAM216B protein family
  2. NM_182508.3NP_872314.1  protein FAM216B

    See identical proteins and their annotated locations for NP_872314.1

    Status: VALIDATED

    Description
    Transcript Variant: This variant (2) differs in the 5' UTR, compared to variant 1. Variants 1 and 2 encode the same protein.
    Source sequence(s)
    AK098238, AK310859, AL138819, CB240730, DA592345, DB221838
    Consensus CDS
    CCDS9386.1
    UniProtKB/Swiss-Prot
    Q8N7L0
    Related
    ENSP00000445786.1, ENST00000537894.5
    Conserved Domains (1) summary
    pfam15107
    Location:4106
    FAM216B; FAM216B protein family

RefSeqs of Annotated Genomes: Homo sapiens Updated Annotation Release 109.20211119

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference GRCh38.p13 Primary Assembly

Genomic

  1. NC_000013.11 Reference GRCh38.p13 Primary Assembly

    Range
    42781584..42791549
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)
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